Switched resource labels to process_single

phac-nml · Apr 19, 2024 · f87dfa3 · f87dfa3
1 parent f3dfd4c
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,14 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v0.1.1 - [2024-04-22]
+
+### Added
+
+### Changed
+
+- Switched the resource labels for **parse_fastp**, **select_pointfinder**, **report**, and **parse_kat** from `process_low` to `process_single` as they are all configured to run on the local Nextflow machine.
+
 ## v0.1.0 - [2024-03-22]
 
 Initial release of phac-nml/mikrokondo. Mikrokondo currently supports: read trimming and quality control, contamination detection, assembly (isolate, metagenomic or hybrid), annotation, AMR detection and subtyping of genomic sequencing data targeting bacterial or metagenomic data.

diff --git a/modules/local/parse_fastp.nf b/modules/local/parse_fastp.nf
@@ -3,7 +3,7 @@ import groovy.json.JsonSlurper
 
 process PARSE_FASTP{
     tag "$meta.id"
-    label "process_low"
+    label "process_single"
 
     input:
     tuple val(meta), val(json)

diff --git a/modules/local/parse_kat.nf b/modules/local/parse_kat.nf
@@ -4,7 +4,7 @@ import groovy.json.JsonSlurper
 
 process PARSE_KAT {
     tag "$meta.id"
-    label "process_low"
+    label "process_single"
     container "${workflow.containerEngine == 'singularity' || workflow.containerEngine == 'apptainer' ? task.ext.containers.get('singularity') : task.ext.containers.get('docker')}"
 
     input:

diff --git a/modules/local/report.nf b/modules/local/report.nf
@@ -11,7 +11,7 @@ import java.nio.file.Paths
 
 process REPORT{
     tag "Report Generation"
-
+    label "process_single"
 
     input:
     val test_in

diff --git a/modules/local/select_pointfinder.nf b/modules/local/select_pointfinder.nf
@@ -2,7 +2,7 @@
 
 process IDENTIFY_POINTDB {
     tag "$meta.id"
-    label "process_low"
+    label "process_single"
 
     input:
     tuple val(meta), val(species)

diff --git a/nextflow.config b/nextflow.config
@@ -1026,7 +1026,7 @@ manifest {
     description     = """Mikrokondo beta"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '0.1.0'
+    version         = '0.1.1'
     defaultBranch   = 'main'
     doi             = ''
 }