updateed fastp unqualified percent

phac-nml · Dec 11, 2023 · 2d8cb3b · 2d8cb3b
1 parent bd1c73f
commit 2d8cb3b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/nextflow.config b/nextflow.config
@@ -192,7 +192,7 @@ params {
         cut_tail_window_size = 4 // default is 4
         complexity_threshold = 20 // FastP default is 30 not 20
         qualified_quality_phred = 10 // min quality for a read to contain
-        unqualified_percent_limit = 5 // if the minimum quality of a read is below 10 that read is discarded
+        unqualified_percent_limit = 10 // if the minimum quality of a read is below 10 that read is discarded
         polyg_min_len = 10
         polyx_min_len = 10
         illumina_length_min = 35