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Scheme creation#52

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peterk87 wants to merge 15 commits intodevelopmentphac-nml/biohansel:developmentfrom scheme-creation/_basephac-nml/biohansel:scheme-creation/_baseCopy head branch name to clipboard

+85,478-683

Commits

Commits on Jul 13, 2018

• argparse -> click; bio_hansel -> biohansel; creating base for biohansel create

  Show description for ab6bf7f
  

  pkruczkiewicz

  committed
  ab6bf7f

Commits on Jul 16, 2018

• add create subcommand; restructure/refactor for different subcommands

  Show description for 1b6471a
  

  pkruczkiewicz

  committed
  1b6471a

Commits on Aug 1, 2018

• fix packaging and add ability to python setup.py test to run tests

  Show description for 79e29c9
  

  pkruczkiewicz

  committed
  79e29c9

Commits on Aug 7, 2018

• Update .travis.yml

  peterk87

  authored
  68b5c7e

Commits on Aug 9, 2018

• Update cli.py

  peterk87

  authored
  d6d2270

• Update utils.py

  peterk87

  authored
  7017458

• Update cli.py

  Show description for c2fb9cf
  peterk87

  authored
  c2fb9cf

• Update utils.py

  peterk87

  authored
  f1df3ad

• Update utils.py; docs fix, refactoring, renaming

  Show description for 47fa20f
  

  pkruczkiewicz

  committed
  47fa20f

• Update utils.py

  Show description for 51dafd0
  

  pkruczkiewicz

  committed
  51dafd0

• Better arg names

  Show description for 9511966
  

  pkruczkiewicz

  committed
  9511966

• doc fix; deconstruct complex condition

  Show description for cc9e671
  

  pkruczkiewicz

  committed
  cc9e671

• flipped condition in is_overall_coverage_low; added unit test

  Show description for 98cd34d
  

  pkruczkiewicz

  committed
  98cd34d

Commits on Sep 7, 2018

• wip: scheme creation from HC of SNV binary matrix

  

  pkruczkiewicz

  committed
  aca1769

Commits on Dec 4, 2018

• fix flat clusters table column order; greatest to least distance threshold

  peterk87

  committed
  ad7ba3c