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Initial port to v1a schema, minus sars-cov-2 varskip schemes
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bede committed Aug 22, 2024
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# Primer schemes

**🚨 Migration to v1 scheme specification in progress**

A versioned and schematised repository of tiling amplicon PCR primer scheme definitions (created with e.g. [Primal Scheme](https://primalscheme.com)) for pathogen sequencing, made with the objective of eliminating ambiguity in scheme naming and versioning in order to facilitate accurate analysis and reuse of amplicon sequence data.


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1. A reference sequence ([`reference.fasta`](https://github.com/pha4ge/primer-schemes/blob/main/sars-cov-2/artic/v4.1/reference.fasta))
2. A seven column BED file of primer sequences & positions in reference coordinates ([`primer.bed`](https://github.com/pha4ge/primer-schemes/blob/main/sars-cov-2/artic/v4.1/primer.bed))
3. A metadata file in YAML format adhering to [this schema](https://github.com/pha4ge/primer-schemes/blob/main/schema/primer_scheme.yml) ([`info.yml`](https://github.com/pha4ge/primer-schemes/blob/main/sars-cov-2/artic/v4.1/info.yml))
3. A metadata file in YAML format adhering to [this schema](https://github.com/pha4ge/primaschema/blob/main/src/primaschema/schema/info.yml) ([`info.yml`](https://github.com/pha4ge/primer-schemes/blob/main/schemes/sars-cov-2/artic/400/v4.1.0/info.yml))



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