fixed getInteger bug in EPMCResult.json

petermr · Sep 27, 2021 · d61d556 · d61d556
1 parent 9b17196
commit d61d556
Show file tree

Hide file tree

Showing 8 changed files with 14 additions and 2 deletions.
diff --git a/src/ipynb/jupyter/.DS_Store b/src/ipynb/jupyter/.DS_Store
diff --git a/src/ipynb/work/.DS_Store b/src/ipynb/work/.DS_Store
diff --git a/src/ipynb/work/search/.DS_Store b/src/ipynb/work/search/.DS_Store
diff --git a/src/ipynb/work/thermo/.DS_Store b/src/ipynb/work/thermo/.DS_Store
diff --git a/src/main/java/org/contentmine/norma/biblio/EPMCResultsJsonEntry.java b/src/main/java/org/contentmine/norma/biblio/EPMCResultsJsonEntry.java
@@ -285,15 +285,17 @@ private Boolean getBoolean(String field) {
 
 	private Integer getInteger(String field) {
 		JsonElement jsonElement = getField(field);
-		Integer value = jsonElement.getAsInt();
+		Integer value = jsonElement == null ? null : jsonElement.getAsInt();
 		return value;
 	}
 
 	private JsonElement getField(String field) {
 		JsonElement entry = getJsonEntry();
 		JsonObject jsonObject = entry.getAsJsonObject();
 		JsonElement jsonElement = jsonObject.get(field);
-		jsonElement = strip1ElementArray(jsonElement);
+		if (jsonElement != null) {
+			jsonElement = strip1ElementArray(jsonElement);
+		}
 		return jsonElement;
 	}
 

diff --git a/src/main/resources/org/contentmine/ami/plugins/dictionary/amidict.ini b/src/main/resources/org/contentmine/ami/plugins/dictionary/amidict.ini
@@ -1,3 +1,12 @@
+[ID]
+# defines a global namespace
+# NOT yet developed
+id = petermr
+location = URL
+namespace_base = https://contentmine.org/
+namespace = ${namespace_base}/home
+prefix = petermr
+
 [DICTIONARIES]
 
 animaltest = animaltest.xml
@@ -44,3 +53,4 @@ terpenesynthase = terpenesynthase.xml
 tropicalVirus = tropicalVirus.xml
 wetlands = wetlands.xml
 wildlife = wildlife.xml
+
diff --git a/src/test/resources/org/contentmine/ami/rahul/.DS_Store b/src/test/resources/org/contentmine/ami/rahul/.DS_Store
diff --git a/src/test/resources/org/contentmine/ami/rahul/rahul1/pdfimages/.DS_Store b/src/test/resources/org/contentmine/ami/rahul/rahul1/pdfimages/.DS_Store