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get 0.4 release tag. see each individual module for what improvments …
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…are done

summary:

The graph to layout code add a new rule to reduce mis-assembly, see PacificBiosciences/FALCON#179
Initial raw read alignment hit are sorted by overlap length to get error correction reads more efficiently.  See https://github.com/PacificBiosciences/DALIGNER/pull/, PacificBiosciences/DALIGNER#6
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@pb-jchin
pb-jchin committed Sep 7, 2015
1 parent c6dd28d commit f48e220
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Showing 3 changed files with 3 additions and 3 deletions.
2 changes: 1 addition & 1 deletion DALIGNER
Submodule DALIGNER updated 4 files
+3 −0 .gitignore
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+78 −12 LA4Falcon.c
+5 −3 filter.c
2 changes: 1 addition & 1 deletion DAZZ_DB
Submodule DAZZ_DB updated 1 files
+2 −1 GNUmakefile
2 changes: 1 addition & 1 deletion FALCON
Submodule FALCON updated 16 files
+4 −1 .gitignore
+0 −41 examples/fc_run_CHM1_P6.cfg
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+9 −1 setup.py
+8 −6 src/py/mains/consensus.py
+22 −0 src/py/mains/dedup_a_tigs.py
+24 −37 src/py/mains/graph_to_contig.py
+34 −1 src/py/mains/ovlp_to_graph.py
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+31 −0 src/py/mains/tasks.py
+419 −0 src/py/run_support.py
+5 −0 src/py_scripts/fc_dedup_a_tigs.py

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