Merge pull request PacificBiosciences#4 in SAT/daligner from DEP-187/…

…build_munging to develop

* commit 'e10563fa8513eb66fd437ac6531629f9bf003f4b':
  adding the internal build script

bamboo_build.sh

@@ -0,0 +1,21 @@
+#!/bin/bash -ex
+
+type module >& /dev/null || source /mnt/software/Modules/current/init/bash
+
+set -vex
+module load gcc/4.9.2
+module load git/2.8.3
+module load ccache
+
+#echo "## Clean"
+#git clean -fdx
+
+ls -l
+make -C DAZZ_DB clean
+make -C DALIGNER clean
+make -C DAZZ_DB -j
+make -C DALIGNER -j
+
+make -f /dept/secondary/siv/testdata/hgap/synth5k/LA4Falcon/makefile clean
+PATH=.:${PATH} make -C DALIGNER -f /dept/secondary/siv/testdata/hgap/synth5k/LA4Falcon/makefile
+make -f /dept/secondary/siv/testdata/hgap/synth5k/LA4Falcon/makefile clean