Paris Epigenetics dockerfiles collection

The repository contains a collection of dockerfiles that we are using to build custom docker images at Paris Epigenetics UMR7216.

It is branched form the ParisGenomics dockerfiles repository.

Name		Name	Last commit message	Last commit date
Latest commit History 154 Commits
Rsubread/1.18.0		Rsubread/1.18.0
SARTools		SARTools
babel		babel
bcbb-gff/0.6.2		bcbb-gff/0.6.2
bcbio-nextgen		bcbio-nextgen
bcl2fastq/bcl2fastq-1.8.4		bcl2fastq/bcl2fastq-1.8.4
bcl2fastq2		bcl2fastq2
bed2bigbed		bed2bigbed
bedops/2.4.14		bedops/2.4.14
bedtools/2.25.0		bedtools/2.25.0
biomart/2.26.1		biomart/2.26.1
bioperl/bioperl-1.6.924		bioperl/bioperl-1.6.924
biopython/1.63-1		biopython/1.63-1
bioservices/1.4.1		bioservices/1.4.1
biotoolbox		biotoolbox
blacklistremove/1.0		blacklistremove/1.0
bowtie		bowtie
bwa		bwa
casava/casava-1.8.2		casava/casava-1.8.2
cutadapt		cutadapt
deeptools		deeptools
deseq		deseq
dwgsim/dwgsim-0.1.11		dwgsim/dwgsim-0.1.11
eoulsan/eoulsan-1.2.2		eoulsan/eoulsan-1.2.2
express/express-1.5.1		express/express-1.5.1
fastqc		fastqc
genometools/genometools-1.5.3		genometools/genometools-1.5.3
gff3-ptools/gff3-ptools-0.4.0		gff3-ptools/gff3-ptools-0.4.0
hisat/0.1.5-beta		hisat/0.1.5-beta
htseq		htseq
kentutils/302.1.0		kentutils/302.1.0
macs		macs
matplotlib/1.4.3		matplotlib/1.4.3
miso/miso-0.5.3		miso/miso-0.5.3
multiqc/latest		multiqc/latest
olb/olb-1.9.4		olb/olb-1.9.4
picard/1.134		picard/1.134
plastid/0.4.6		plastid/0.4.6
ribomap/1.2		ribomap/1.2
ribopicker/0.4.3		ribopicker/0.4.3
riboproanalysis/1.0.0		riboproanalysis/1.0.0
riboseqR/1.6.0		riboseqR/1.6.0
rsem		rsem
samtools/0.1.19		samtools/0.1.19
star		star
subread		subread
tophat2/2.0.14		tophat2/2.0.14
trimgalore/0.4.1		trimgalore/0.4.1
umitools/0.2.6		umitools/0.2.6
README.md		README.md

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