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Git policies were preventing me from pushing my changes to my own fork because of the blob SAS token details in credentials.env. Furthermore, updating credentials.env meant that my secrets would be uploaded to git (sice the file already exists there .gitignore does not ignore it). I added a new .env file and modified .gitignore to ignore it. Lastly, I modified the way environment vairables are loaded so they can be reloaded if they are changed half-way through the notebook execution.