Code

NWB Loader#10

Code

Merged

sneakers-the-rat merged 22 commits intomainp2p-ld/nwb-linkml:mainfrom nwb-loaderp2p-ld/nwb-linkml:nwb-loaderCopy head branch name to clipboardSep 12, 2024

+11,758-3,449

Commits

Commits on Aug 30, 2024

• testing nwb file, and experimenting with yaml format

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  committed
  b555ccb

Commits on Aug 31, 2024

• working on grpah loading of nwb files

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  committed
  49585e4

Commits on Sep 2, 2024

• split up fixtures and nwb fixture in particular, add --clean pytest option

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  3641d33

• lint

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  53c415d

• codespell

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  a693427

Commits on Sep 3, 2024

• update models to correctly handle ElementIdentifiers

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  97135c1

• exclude metadata vars from column and category checks

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  ee35e59

• instantiate ValidationError according to pydantic/pydantic#6734

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  676d42d

• model update

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  cd3d7ca

• checkpointing working on model loading. it's a sloggggggggg

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  d1498a3

Commits on Sep 4, 2024

• CHECKPOINT WITH IT WORKING before cleanup and model regeneration

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  8078492

• updating model generation methods, still some models being converted to str instead of being inlined, but almost there

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  27b5ddd

Commits on Sep 11, 2024

• Updating model generation methods to make both loader tests and hdmf include unit tests pass (pending following model update commit)

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  000ddde

• regenerate models

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  dfcb395

• use in-repo version of models

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  3f360c2

• bump nwb-models version

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  b76b0fd

• bump version of dependant nwb-models

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  1f1325e

Commits on Sep 12, 2024

• clean up old hdf5 reader methods, fix truncate_hdf5 method, make proper'd test data files with working references

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  d31ac29

• remove unused code, nocover some debug arms

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  bb59c9d

• working thru tests for nwb file

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  91b2abf

• add id to index name on aligneddynamictable correctly

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  committed
  95fbce1

• lint

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  committed
  0eeea4c