Tests

Restore generator tests #291

	name: Tests

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	jobs:
	test:
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.10", "3.11", "3.12"]

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Install system libraries
	run: \|
	sudo apt update
	sudo apt install -y libhdf5-dev hdf5-tools

	- name: Set up python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'
	cache-dependency-path: \|
	nwb_linkml/pyproject.toml
	nwb_schema_language/pyproject.toml
	nwb_models/pyproject.toml

	- name: Install dependencies
	run: \|
	pip install -e .[tests]
	pip install -e ../nwb_schema_language
	pip install -e ../nwb_models
	working-directory: nwb_linkml

	- name: Run Tests
	run: pytest
	working-directory: nwb_linkml

	- name: Run nwb_schema_language Tests
	run: pytest
	working-directory: nwb_schema_language

	- name: Coveralls Parallel
	uses: coverallsapp/[email protected]
	if: runner.os != 'macOS'
	with:
	flag-name: run-${{ join(matrix.*, '-') }}
	parallel: true
	debug: true

	finish-coverage:
	needs: test
	if: ${{ always() }}
	runs-on: ubuntu-latest
	steps:
	- name: Coveralls Finished
	uses: coverallsapp/[email protected]
	with:
	parallel-finished: true

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