Metapopulation modelling #21
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…dditional args in makefile for metapop input files
…g from file. code now reproduces gostic et al work
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Scripts for metapopulation modelling using a discrete time, determinisitic SEIR model without vital dynamics (see the relevant section here). This can be used to generate toy data to test the$R_t$ models, like with Gostic, et. al.. The code also reproduces their results for $R_t$ (final figure of their report). This forms part of #8.