MAINT turn rank deficiency exception to warning #139
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ghost
approved these changes
Jun 8, 2023
pydeseq2/dds.py
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| "The design matrix is not full rank, so the model cannot be " | ||
| "fitted. Please remove the design variables that are linear " | ||
| "combinations of others." |
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This text is adapted to a valueError but not necessarily a warning. What do you think about toning down the message?
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Thanks for your review! I've updated the warning.
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Reference Issue or PRs
Fixes #136
What does your PR implement? Be specific.
Throw a
UserWarninginstead of aValueErrorwhen aDeseqDataSetis initialized with a rank-deficient design matrix.This allows users to run design-free VST without providing a full rank design (as described in #136).