BUG dispersion prior variance

[mikelove]

In the dispersion prior variance step, the expected variance of the log dispersion involves a function of (m - p), number of samples minus number of columns of model matrix. Compare to:

https://github.com/mikelove/DESeq2/blob/devel/R/core.R#L1182

I'm trying to align some of the parameters a bit.

[BorisMuzellec]

Hi @mikelove, nice catch, thanks a lot for checking the code!

Please don't hesitate to open PRs or issues if you find other mistakes, or if you have suggestions to make :).

I'm merging this PR.

[mikelove]

Great.

I have a python beginner question: how can I do local development? That is, I've installed with pip install, but how can I now replace that installed version with a local copy of the code that I've cloned from GitHub?

[ghost]

Hi @mikelove

how can I do local development?

Instead of pip install, just do pip install -e . in repository you cloned, this puts the package in editable mode.