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Issues: oushujun/EDTA

How to run EDTA in large genomes (>10Gb)?
#61 by benedictcoombes was closed Apr 19, 2021
Closed 23
TEanno.sum generation
#169 by wyim-pgl was closed Apr 2, 2021
Closed 1
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46 Open 469 Closed
46 Open 469 Closed
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Issues list

TIR learner breaks despite --force=1
#534 opened Dec 30, 2024 by katieemelianova
different versions of EDTA
#533 opened Dec 30, 2024 by chao77777777
genome.mod.EDTA.TEanno.gff3
#532 opened Dec 28, 2024 by jklFF
Meet erro when using EDTA(singualrity)
#531 opened Dec 27, 2024 by dupuquan
Util folder missing (prepare curated library)
#530 opened Dec 26, 2024 by weilu1998
2
Heliano in EDTA?
#524 opened Dec 5, 2024 by chestnutbt
3
TIR-learner overutilizes threads
#523 opened Dec 5, 2024 by tinyfallen
@lutianyu2001
1
ERROR: Raw TIR results not found in sample_ragtag.fa.mod.EDTA.raw/sample_ragtag.fa.mod.TIR.intact.raw.fa
#518 opened Nov 10, 2024 by wangguiqian
4
error in Identify TIR candidates bug Something isn't working
#516 opened Nov 1, 2024 by qfh20m20m
@lutianyu2001
9
LAI values could not be calculated
#515 opened Nov 1, 2024 by sunshichao0916
4
can't find LTR and NO SINE on Split Genome question Further information is requested
#510 opened Oct 11, 2024 by rr9002
2
Chr9 of Rice(NIP) 4M do not have TE ?
#508 opened Sep 23, 2024 by GooLey1025
2
Error: Error while loading sequence perl filter_gff3.pl file.gff3 file.list > new.gff3
#506 opened Sep 20, 2024 by huaixiaolu
1
combine_RMrows.pl erro
#498 opened Aug 26, 2024 by jwli-code
1
unknown/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. question Further information is requested
#493 opened Aug 17, 2024 by jwli-code
1
When I run PanEDTA, it seems to rerun EDTA from scratch for each chromosome instead of starting the merging process directly.
#487 opened Jul 23, 2024 by dongaoqian
1
Warning: LOC list - is empty
#483 opened Jul 19, 2024 by wangyangXie
8
Repeat masker stalling question Further information is requested
#480 opened Jul 10, 2024 by yanarizzieri
5
CrossmatchSearchEngine::parseOutput issue
#479 opened Jul 9, 2024 by cai1991
8
Same ID for LTR-RT _LTR and _INT families in panEDTA
#477 opened Jul 3, 2024 by lanasushko
panEDTA timing out on large genomes
#463 opened May 9, 2024 by joannarifkin
4
TE_XXX in gff3 from panEDTA question Further information is requested
#462 opened May 9, 2024 by CongLiu37
1
Unusual Output and Failure During Regular Annotation help wanted Extra attention is needed
#461 opened May 6, 2024 by sjteresi
2
ERROR: TE annotation stats results not found in B.purpurea.fasta.mod.EDTA.TE.fa.stat!
#457 opened Apr 24, 2024 by Qikiiso
3
PanEDTA test output question Further information is requested
#454 opened Apr 16, 2024 by AnaKurdadze
1
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