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Rework makefile to enable incremental compilation #247
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The history appears to have been changed at some point and #118 got dropped. This PR more or less re-creates it on top of the new makefile. Specifically, it adds non-phony targets for
jackalandjackalctlthat can be used to rebuild the tools only when build files change. This could be done for the various proto files too to improve the incremental compilation process further, but as discussed in other issues I really don't understand the protobuf build process very well so I thought I'd keep it simple at first until I was sure you'd even want these changes; no pressure, of course.