Revive Debian builds

.github/workflows/build-and-test.yml

@@ -26,9 +26,9 @@ jobs:
           el7-gnu8-ohpc,
           el7-gnu8-openmpi-ohpc,
           suse-pgi,
-          suse-pgi-openmpi ]
-          #debian-sid,
-          #debian-sid-openmpi ]
+          suse-pgi-openmpi,
+          debian-sid,
+          debian-sid-openmpi ]
         include:
         - jobname: el7
           container: ornladios/adios2:ci-el7
@@ -40,15 +40,12 @@ jobs:
           container: ornladios/adios2:ci-suse-pgi
         - jobname: suse-pgi-openmpi
           container: ornladios/adios2:ci-suse-pgi-openmpi
-        #- jobname: debian-sid
-        #  container: debian:sid
-        #- jobname: debian-sid-openmpi
-        #  container: debian:sid
+        - jobname: debian-sid
+          container: ornladios/adios2:ci-debian-sid
+        - jobname: debian-sid-openmpi
+          container: ornladios/adios2:ci-debian-sid
 
     steps:
-    - name: Bootstrap
-      run: /bin/sh -c "apt-get update && apt-get dist-upgrade -y && apt-get install -y git"
-      if: contains(matrix.jobname, 'debian')
     - uses: actions/checkout@v2
       with:
         ref: ${{ github.event.pull_request.head.sha }}

scripts/ci/cmake/ci-debian-sid-openmpi.cmake

@@ -17,13 +17,16 @@ ADIOS2_LIBRARY_SUFFIX:STRING=_openmpi
 ADIOS2_EXECUTABLE_SUFFIX:STRING=.openmpi
 
 MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe
+MPI_C_COMPILER:FILEPATH=/usr/bin/mpicc.openmpi
+MPI_CXX_COMPILER:FILEPATH=/usr/bin/mpic++.openmpi
+MPI_Fortran_COMPILER:FILEPATH=/usr/bin/mpif77.openmpi
+MPIEXEC_EXECUTABLE:FILEPATH=/usr/bin/mpiexec.openmpi
+HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc.openmpi
 ")
 
 set(CTEST_TEST_ARGS
   PARALLEL_LEVEL 1
 )
 set(CTEST_CMAKE_GENERATOR "Ninja")
-
-set(ADIOS_TEST_REPEAT 0)
 list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}")
 include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake)

scripts/ci/cmake/ci-debian-sid.cmake

@@ -15,10 +15,10 @@ ADIOS2_USE_SST:BOOL=ON
 ADIOS2_USE_ZeroMQ:BOOL=ON
 ADIOS2_LIBRARY_SUFFIX:STRING=_serial
 ADIOS2_EXECUTABLE_SUFFIX:STRING=.serial
+
+HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc
 ")
 
 set(CTEST_CMAKE_GENERATOR "Ninja")
-
-set(ADIOS_TEST_REPEAT 0)
 list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}")
 include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake)

scripts/ci/images/build-native-images.sh

@@ -25,7 +25,7 @@ function build_partially_squashed_image()
 echo "************************************************************"
 echo "* Building fully squashed root base images                 *"
 echo "************************************************************"
-ROOT_BASE_IMAGES="el7-base suse-pgi-base fedora-sanitizers-base"
+ROOT_BASE_IMAGES="el7-base suse-pgi-base fedora-sanitizers-base debian-sid"
 for IMAGE in ${ROOT_BASE_IMAGES}
 do
   echo "${IMAGE}"
@@ -58,7 +58,7 @@ done
 echo "************************************************************"
 echo "* Push all images                                          *"
 echo "************************************************************"
-ALL_IMAGES="el7-base el7 el7-gnu8-ohpc-base el7-gnu8-ohpc el7-gnu8-openmpi-ohpc el7-intel-ohpc-base el7-intel-ohpc el7-intel-openmpi-ohpc suse-pgi-base suse-pgi suse-pgi-openmpi fedora-sanitizers-base fedora-ubsan"
+ALL_IMAGES="el7-base el7 el7-gnu8-ohpc-base el7-gnu8-ohpc el7-gnu8-openmpi-ohpc el7-intel-ohpc-base el7-intel-ohpc el7-intel-openmpi-ohpc suse-pgi-base suse-pgi suse-pgi-openmpi fedora-sanitizers-base fedora-ubsan debian-sid"
 for IMAGE in ${ALL_IMAGES}
 do
   echo "${IMAGE}"

scripts/ci/images/debian-sid/Dockerfile

@@ -0,0 +1,32 @@
+FROM debian:sid
+
+RUN apt-get update && \
+    apt-get dist-upgrade -y --no-install-recommends && \
+    apt-get install -y --no-install-recommends \
+        curl \
+        python3-all \
+        ca-certificates \
+        git \
+        cmake \
+        ninja-build \
+        make \
+        g++ \
+        gfortran \
+        pkg-config \
+        libpugixml-dev \
+        libyaml-cpp-dev \
+        pybind11-dev \
+        libgtest-dev \
+        nlohmann-json3-dev \
+        libpython3-dev \
+        python3-numpy \
+        python3-mpi4py \
+        libblosc-dev \
+        libbz2-dev \
+        libpng-dev \
+        libczmq-dev \
+        libopenmpi-dev \
+        libhdf5-serial-dev \
+        libhdf5-openmpi-dev \
+        libfabric-dev \
+        libffi-dev