Repositories list

• drug-resistance

  Public
  R

  •

  GNU General Public License v3.0

  •1•9•0•0•Updated Aug 24, 2024Aug 24, 2024

• TRIPs

  Public
  Jupyter Notebook

  •

  MIT License

  •1•4•0•0•Updated Sep 5, 2023Sep 5, 2023

• GBS_placenta

  Public
  MATLAB

  •1•1•0•0•Updated Jan 25, 2023Jan 25, 2023

• GBS_placenta2

  Public
  MATLAB

  •1•0•0•0•Updated Nov 3, 2022Nov 3, 2022

• knn-smoothing

  Public
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data

  Python

  •11•50•2•1•Updated Aug 30, 2022Aug 30, 2022

• Pathcourse

  Public
  MATLAB

  •1•0•0•0•Updated Aug 19, 2022Aug 19, 2022

• PanCancer

  Public
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com/:f:/g/personal/dalia_barkley_nyulangone_org/EuHetdAOc2pLjm9XUwqdWicBnlXIbyvHx-EOC-inP-SGUg?e=rxa7Ry

  R

  •4•24•5•0•Updated Aug 17, 2022Aug 17, 2022

• APA-Seq

  Public
  MATLAB

  •0•0•0•0•Updated Apr 17, 2020Apr 17, 2020

• enhance-R

  Public
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (R implementation)

  R

  •2•6•2•0•Updated Jun 12, 2019Jun 12, 2019

• enhance

  Public
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)

  Python

  •2•13•1•0•Updated Jun 5, 2019Jun 5, 2019

• moana

  Public
  Moana: Robust cell type classification of single-cell RNA-Seq data

  Python

  •4•22•3•0•Updated Nov 8, 2018Nov 8, 2018

• celseq2

  Public
  Generate the UMI count matrix from CEL-Seq2 sequencing data

  snakemakebioinformatics-pipelinesingle-cell-rna-seq+ 3spatial-transcriptomicscel-seq2umi-count-matrix

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •13•20•9•0•Updated Oct 12, 2018Oct 12, 2018

• CEL-Seq-pipeline

  Public
  Python

  •

  GNU General Public License v3.0

  •12•33•5•1•Updated Jul 11, 2018Jul 11, 2018