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    13 repositories

    • caduceus

      Public
      Bi-Directional Equivariant Long-Range DNA Sequence Modeling
      Python
      •
      Apache License 2.0
      •25•0•0•0•Updated Dec 21, 2024Dec 21, 2024

    • mamba

      Public
      Mamba SSM architecture - Modified to run in Context Parallel Mode
      Jupyter Notebook
      •
      Apache License 2.0
      •1.2k•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • CRISPR-Bulge

      Public
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • GEARS

      Public
      GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
      Python
      •
      MIT License
      •42•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • MapLight-TDC

      Public
      Jupyter Notebook
      •
      MIT License
      •4•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • scDiffusion

      Public
      A model developed for the generation of scRNA-seq data
      Jupyter Notebook
      •
      MIT License
      •8•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • scGPT

      Public
      Jupyter Notebook
      •
      MIT License
      •220•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • Exphormer

      Public
      Exphormer: Sparse Transformer for Graphs
      Python
      •
      MIT License
      •124•0•0•0•Updated Mar 28, 2023Mar 28, 2023

    • torchdyn_sphinx_theme

      Public
      PyTorch Lightning Sphinx Theme
      CSS
      •
      MIT License
      •138•1•0•0•Updated Sep 22, 2022Sep 22, 2022

    • jupyter-ecs-spawner

      Public
      ECS Spawner for JupyterHub
      Python
      •2•0•0•0•Updated Aug 15, 2022Aug 15, 2022

    • sympy

      Public
      A computer algebra system written in pure Python
      Python
      •
      Other
      •4.5k•0•0•0•Updated Jul 29, 2022Jul 29, 2022

    • pytorch_geometric

      Public
      Graph Neural Network Library for PyTorch
      Python
      •
      MIT License
      •3.7k•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • GeometricCoAttention

      Public
      PyG version of Andreea Deac's Graph Co-Attention module -- development for incorporation into PyG
      Jupyter Notebook
      •0•3•0•0•Updated Jan 10, 2022Jan 10, 2022