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    9 repositories

    • GraphComm

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • scATAC.Explorer

      Public
      A curated collection of currently available scATAC-seq datasets accessible through R, and exportable to other languages.
      R
      •1•7•0•0•Updated Nov 12, 2024Nov 12, 2024

    • GraphComm_old

      Public
      This repository is a fork of the official GraphComm project, tailored to seamlessly integrate with datasets fetched from TMExplorer. Additionally, significant enhancements have been made to increase user-friendliness and accessibility, reducing the level of technical expertise required to use GraphComm.
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Jan 12, 2024Jan 12, 2024

    • ochroGWAS

      Public
      Pipeline for automatic integration of open chromatin regions (peaks) and GWAS data.
      R
      •2•4•1•0•Updated Sep 27, 2022Sep 27, 2022

    • Clustering

      Public
      Clustering single cell rna-seq data
      R
      •0•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • Subsemble_Cell_Type_Classifier

      Public
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022

    • TMExplorer

      Public
      A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
      rcancerscrna-seqtumor-microenvironmenttumour-microenvironment
      R
      •5•17•0•0•Updated Jun 1, 2022Jun 1, 2022

    • scRNAseq-Automated-Cell-Type-Labelling

      Public
      Jupyter Notebook
      •0•6•0•0•Updated Dec 16, 2021Dec 16, 2021

    • open-chromatin-db

      Public
      JavaScript
      •2•0•0•0•Updated Nov 27, 2018Nov 27, 2018