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@rqtl R/qtl

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    16 repositories

    • qtl2fst

      Public
      R/qtl2 package using fst to store genotype probabilities
      R
      •
      GNU General Public License v3.0
      •3•2•0•0•Updated Nov 23, 2024Nov 23, 2024

    • qtl2

      Public
      QTL analysis software for high-dimensional data and complex cross designs
      R
      •
      GNU General Public License v3.0
      •23•34•27•0•Updated Nov 23, 2024Nov 23, 2024

    • qtl2cl

      Public
      Command-line interface for R/qtl2
      R
      •
      GNU General Public License v3.0
      •2•2•0•0•Updated Oct 7, 2024Oct 7, 2024

    • rqtl.github.io

      Public
      Website for R/qtl
      R
      •0•3•0•0•Updated Aug 22, 2024Aug 22, 2024

    • qtl2convert

      Public
      R package for converting data among R/qtl2, DOQTL, and R/qtl
      R
      •
      GNU General Public License v3.0
      •3•5•0•0•Updated Apr 4, 2024Apr 4, 2024

    • GNapi

      Public
      R package for connecting to the GeneNetwork API
      R
      •
      Other
      •5•0•1•0•Updated Jul 28, 2023Jul 28, 2023

    • mmconvert

      Public
      Mouse map converter R package, for converting positions between the build 39 physical map and the Cox genetic map
      R
      •
      GNU General Public License v3.0
      •2•4•1•0•Updated Jun 22, 2023Jun 22, 2023

    • qtl2data

      Public
      Example data for R/qtl2
      HTML
      •5•10•1•0•Updated Sep 17, 2021Sep 17, 2021

    • qtl2bioc

      Public
      R/qtl2 module for connecting to Bioconductor
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Dec 27, 2020Dec 27, 2020

    • qtl2browse

      Public
      Genetics genome browser
      R
      •
      Other
      •1•0•0•0•Updated Dec 26, 2020Dec 26, 2020

    • qtl2cran

      Public
      scaled-back CRAN-like repository for R/qtl2
      CSS
      •0•0•0•0•Updated May 22, 2020May 22, 2020

    • GWASapi

      Public
      R package to connect to the NHGRI-EBI catalog of GWAS summary statistics
      R
      •
      Other
      •1•0•0•0•Updated Sep 29, 2019Sep 29, 2019

    • qtl2db

      Public
      R/qtl2 module for connecting to genome databases
      R
      •
      Other
      •1•0•0•0•Updated Feb 2, 2018Feb 2, 2018

    • qtl2plot

      Public
      R/qtl2 module for data visualization
      R
      •
      Other
      •2•2•0•0•Updated Feb 2, 2018Feb 2, 2018

    • qtl2scan

      Public
      R/qtl2 module for QTL analysis, including genome scans
      R
      •
      Other
      •4•5•0•0•Updated Feb 2, 2018Feb 2, 2018

    • qtl2geno

      Public
      R/qtl2 module for treatment of genotypes (imputation, probability calculation, map estimation)
      R
      •
      Other
      •2•5•0•0•Updated Feb 2, 2018Feb 2, 2018