Repositories list

• phenoplier-cli

  Public
  Jupyter Notebook

  •

  Other

  •0•0•3•0•Updated Jan 7, 2025Jan 7, 2025

• ccc-gpu

  Public
  Jupyter Notebook

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  Other

  •9•0•1•0•Updated Jan 6, 2025Jan 6, 2025

• pivlab-website

  Public
  Source code for the Pividori Lab website

  HTML

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  BSD 3-Clause "New" or "Revised" License

  •5•0•0•1•Updated Jan 6, 2025Jan 6, 2025

• annual_review_of_biomedical_data_science

  Public
  Annual Review of Biomedical Data Science

  HTML

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  Creative Commons Attribution 4.0 International

  •0•0•9•0•Updated Dec 16, 2024Dec 16, 2024

• onboarding

  Public
  Creative Commons Zero v1.0 Universal

  •2•1•1•0•Updated Oct 28, 2024Oct 28, 2024

• phenoplier

  Public
  PhenoPLIER - Gene-module approach to genetic studies

  Jupyter Notebook

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  Other

  •5•0•0•0•Updated Oct 8, 2024Oct 8, 2024

• manubot-ai-editor-evals

  Public
  Prompt evaluations for the Manubot AI Editor

  HTML

  •0•0•3•0•Updated Aug 28, 2024Aug 28, 2024

• phenoplier-manuscript-test

  Public
  PhenoPLIER manuscript

  TeX

  •

  Other

  •4•0•0•5•Updated Jul 10, 2024Jul 10, 2024

• manubot-gpt-manuscript-test

  Public
  Manuscript describing software for the automated revision of manubot manuscripts.

  TeX

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  Other

  •3•0•0•1•Updated Jul 10, 2024Jul 10, 2024

• ccc-manuscript-test

  Public
  HTML

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  Other

  •2•0•0•1•Updated Jul 10, 2024Jul 10, 2024

• INCLUDE_TR01

  Public
  This repository contains data and processing code for pathway-level information extractor in recount3 data.

  Python

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 10, 2024Jul 10, 2024

• ccc

  Public
  Clustermatch Correlation Coefficient (CCC)

  Jupyter Notebook

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  Other

  •9•1•0•0•Updated May 1, 2024May 1, 2024

• manubot-ai-editor-code

  Public
  Source code for evaluation of prompts that is part of the Manubot AI Editor manuscript at: https://github.com/greenelab/manubot-gpt-manuscript

  Jupyter Notebook

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  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Apr 18, 2024Apr 18, 2024

• manubot-gpt-manuscript

  Public
  Manuscript describing software for the automated revision of manubot manuscripts.

  TeX

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  Other

  •3•0•0•3•Updated Mar 25, 2024Mar 25, 2024

• manubot-ai-editor-code-test-phenoplier-manuscript

  Public
  PhenoPLIER manuscript

  TeX

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  Other

  •4•0•0•2•Updated Mar 22, 2024Mar 22, 2024

• manubot-ai-editor-code-test-ccc-manuscript

  Public
  HTML

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  Other

  •2•0•0•2•Updated Mar 19, 2024Mar 19, 2024

• manubot-ai-editor-code-test-manubot-gpt-manuscript

  Public
  Manuscript describing software for the automated revision of manubot manuscripts.

  TeX

  •

  Other

  •3•0•0•2•Updated Mar 19, 2024Mar 19, 2024

• manubot-ai-editor-code-test-mutator-epistasis-manuscript

  Public
  HTML

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  Creative Commons Attribution 4.0 International

  •3•0•0•2•Updated Mar 15, 2024Mar 15, 2024

• manubot-ai-editor-code-test-biochatter-manuscript

  Public
  The Manubot repository for writing the BioChatter paper

  HTML

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  Creative Commons Attribution 4.0 International

  •6•0•0•2•Updated Mar 15, 2024Mar 15, 2024

• wall-of-software

  Public
  A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI

  HTML

  •8•0•0•0•Updated Feb 12, 2024Feb 12, 2024

• pivlab.org

  Public archive
  Source code for Pividori Lab website

  HTML

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  BSD 3-Clause "New" or "Revised" License

  •320•0•0•1•Updated Nov 29, 2023Nov 29, 2023