Skip to content

@phasegenomics Phase Genomics

Change the repository type filter

All

    Repositories list

    10 repositories

    • hic_qc

      Public
      A (very) simple script to QC Hi-C data.
      Python
      •
      GNU Affero General Public License v3.0
      •5•25•0•1•Updated Dec 17, 2024Dec 17, 2024

    • phasegenomics.github.io

      Public
      Phase Genomics Software & Bioinformatics Documentation
      HTML
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • proxiphage_paper

      Public
      TeX
      •0•0•0•0•Updated Jun 15, 2021Jun 15, 2021

    • juicebox_scripts

      Public
      A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
      Python
      •
      GNU Affero General Public License v3.0
      •10•65•3•0•Updated May 22, 2021May 22, 2021

    • FALCON-Phase

      Public
      FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
      C
      •
      Other
      •17•74•8•1•Updated Nov 12, 2020Nov 12, 2020

    • update_assembly

      Public
      Generate two phased Juicebox .assembly files from one master .assembly for FALCON-Phase
      Python
      •
      GNU Affero General Public License v3.0
      •2•3•0•0•Updated Feb 4, 2020Feb 4, 2020

    • annotation_mover

      Public
      Script for porting annotations from one set of scaffolds (usually chromosome-scale scaffolds) to another set of scaffolds generated from the exact same set of contigs.
      Python
      •
      GNU Affero General Public License v3.0
      •0•1•1•0•Updated Jul 3, 2019Jul 3, 2019

    • matlock

      Public
      Simple tools for working with Hi-C data
      C
      •
      GNU Affero General Public License v3.0
      •1•16•9•1•Updated Dec 19, 2018Dec 19, 2018

    • polar_star

      Public
      long-read depth breaking
      Python
      •
      GNU Affero General Public License v3.0
      •0•11•6•0•Updated Apr 19, 2018Apr 19, 2018

    • fungus_heatmap

      Public
      Repository containing an R script used in figure generation
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Feb 23, 2018Feb 23, 2018