Skip to content

@janelia-flyem janelia-flyem

Change the repository type filter

All

    Repositories list

    100 repositories

    • neuclease

      Public
      Tools for computing interactive "cleaves" of agglomerated neuron fragments from a DVID server.
      Jupyter Notebook
      •
      Other
      •5•9•5•0•Updated Nov 8, 2024Nov 8, 2024

    • flyemflows

      Public
      Python
      •
      Other
      •2•1•0•1•Updated Nov 5, 2024Nov 5, 2024

    • flyem-snapshot

      Public
      Connectome exports and reports
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•17•0•Updated Oct 28, 2024Oct 28, 2024

    • dvid

      Public
      Distributed, Versioned, Image-oriented Dataservice
      gobig-datakey-valueneuroscienceversioningimage-storagehttp-servicedataserviceconnectomics
      Go
      •
      Other
      •33•197•70•0•Updated Oct 10, 2024Oct 10, 2024

    • dvidutils

      Public
      A collection of utility functions for dealing with dvid data
      C++
      •2•0•0•1•Updated Aug 7, 2024Aug 7, 2024

    • dvid-console

      Public
      Web console and API help for DVID
      JavaScript
      •1•3•8•12•Updated Jun 7, 2024Jun 7, 2024

    • flyem-conda-recipes

      Public
      Conda recipes for building FlyEM's software stack
      Shell
      •16•0•0•0•Updated May 28, 2024May 28, 2024

    • vol2mesh

      Public
      A mesh generating wrapper in Python 3
      Python
      •
      Other
      •6•7•2•1•Updated May 28, 2024May 28, 2024

    • dvid-resource-manager

      Public
      Manages large-scale batch requests to DVID.
      Python
      •0•1•6•0•Updated May 27, 2024May 27, 2024

    • libdvid-cpp

      Public
      C++ library for accessing DVID's REST API
      HTML
      •
      Other
      •7•6•21•1•Updated May 22, 2024May 22, 2024

    • NeuTu

      Public
      Software package for neuron reconstruction and visualization
      qtsegmentationc-plus-plusconnectome-reconstruction
      C++
      •
      Other
      •13•38•58•1•Updated Apr 4, 2024Apr 4, 2024

    • flyem-views

      Public
      A git repo to preserve the history of gs://flyem-views
      0•1•0•0•Updated Sep 21, 2023Sep 21, 2023

    • imgsearch_sig

      Public
      Fast image search functions using signatures.
      Python
      •0•0•0•0•Updated Jun 1, 2023Jun 1, 2023

    • appdata-store

      Public
      HTTP cloud function interface to the Google Datastore to manage application state.
      Python
      •0•0•0•2•Updated May 1, 2023May 1, 2023

    • echo-secure

      Public
      Go library that uses Google oAuth2 authentication and custom authorization for the echo framework.
      Go
      •2•2•0•5•Updated Mar 7, 2023Mar 7, 2023

    • dvid-io

      Public
      DVID documentation website
      JavaScript
      •0•0•0•40•Updated Mar 5, 2023Mar 5, 2023

    • neuPrint-Build-Update

      Public
      Collection of scripts to build and update the neuPrint neo4j database
      Python
      •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

    • ingestion-guide-aso-mb-4nm

      Public
      A guide to ingesting new volumes into DVID, using the Aso MB 4nm as an example.
      Python
      •0•1•0•0•Updated Oct 4, 2022Oct 4, 2022

    • flyem-recon-qc

      Public
      Quality control scripts used in EM reconstruction
      Python
      •0•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • flyem-build-container

      Public
      Docker container for building FlyEM conda packages
      Dockerfile
      •
      Other
      •50•0•0•0•Updated Sep 12, 2022Sep 12, 2022

    • dvidjs

      Public
      Javascript API to Access a DVID server
      JavaScript
      •
      Other
      •0•1•0•0•Updated Jul 26, 2022Jul 26, 2022

    • buildem

      Public archive
      CMake and other scripts to help build process of FlyEM software
      CMake
      •
      Other
      •15•27•5•1•Updated Jun 9, 2022Jun 9, 2022

    • assignment-manager

      Public
      Assignment manager database and applications
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated May 25, 2022May 25, 2022

    • mad-responder

      Public
      Flask-based responder for the MAD database
      JavaScript
      •
      Other
      •0•0•2•1•Updated May 25, 2022May 25, 2022

    • go

      Public
      Snapshotted, mirrored libraries of useful go packages.
      Go
      •2•2•0•1•Updated May 24, 2022May 24, 2022

    • neutu_user_doc

      Public
      Versioned user documentation for NeuTu/Neu3
      1•0•0•0•Updated Feb 8, 2022Feb 8, 2022

    • lowtis

      Public
      Low Latency Image Service
      C++
      •
      Other
      •4•1•0•0•Updated Jan 1, 2022Jan 1, 2022

    • gcs-proxy

      Public
      Simple reverse proxy that modifies Access-Control-Allow-Origin due to GCS bug
      Dockerfile
      •0•0•0•0•Updated May 29, 2021May 29, 2021

    • clio-py

      Public
      Python client for clio-store
      Python
      •2•0•0•0•Updated May 22, 2021May 22, 2021

    • transfer_em

      Public
      Style transfer of EM data volumes using cycle GANs
      Python
      •0•1•7•0•Updated Mar 10, 2021Mar 10, 2021