Repositories list

• monkeybread

  Public
  Analyzing cellular niches in spatial transcriptomics data

  Python

  •

  MIT License

  •4•27•3•5•Updated May 21, 2024May 21, 2024

• coding_exercise_TCGA_infiltration

  Public
  coding exercise using TCGA immune infiltration data

  MIT License

  •14•43•0•0•Updated Feb 2, 2024Feb 2, 2024

• monkeybread-case-study

  Public
  Application of Monkeybread to a human melanoma tumor dataset

  Jupyter Notebook

  •0•2•0•0•Updated Aug 28, 2023Aug 28, 2023

• recover-counts

  Public
  Recover transcript counts from log-normalized UMI counts data.

  Python

  •1•8•1•0•Updated Jan 5, 2023Jan 5, 2023

• coding_exercises

  Public
  0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

• NSCLS-PIC

  Public
  Contains the PIC-seq algorithm and all the needed code and metadata files to analyze and generate figures for Cohen M. & Giladi A. et al. Nature Cancer 2022

  R

  •1•0•0•0•Updated Oct 5, 2022Oct 5, 2022

• terra-docker

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •35•0•0•0•Updated Mar 17, 2022Mar 17, 2022