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    • Repository for collaboration on Celldom computer vision solutions
      Jupyter Notebook
      Apache License 2.0
      02171Updated Aug 2, 2024Aug 2, 2024
    • Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)
      OCaml
      Apache License 2.0
      1296121Updated Sep 12, 2023Sep 12, 2023
    • A tool to annotate human VCF files with PolyPhen2 effect measures
      Python
      Apache License 2.0
      6923Updated Dec 26, 2022Dec 26, 2022
    • flusso

      Public
      FCS (Flow Cytometry Standard) parser and utility
      JavaScript
      Apache License 2.0
      0237Updated Dec 9, 2022Dec 9, 2022
    • Literature mining for T cell relations
      Jupyter Notebook
      52375Updated Aug 5, 2022Aug 5, 2022
    • cytokit

      Public
      Microscopy Image Cytometry Toolkit
      Jupyter Notebook
      Apache License 2.0
      18115114Updated Jul 15, 2022Jul 15, 2022
    • flowdec

      Public
      TensorFlow Deconvolution for Microscopy Data
      Jupyter Notebook
      Apache License 2.0
      269092Updated Apr 29, 2022Apr 29, 2022
    • genspio

      Public
      Generate Shell Phrases In OCaml
      OCaml
      Apache License 2.0
      348160Updated Dec 15, 2021Dec 15, 2021
    • Explore an alternative way to clone TILs by first single-cell TCR-seq'ing them and then transforming non-exhausted T cells with these TIL TCRs
      HTML
      Apache License 2.0
      0061Updated Nov 30, 2021Nov 30, 2021
    • biokepi

      Public
      Bioinformatics Ketrew Pipelines
      OCaml
      Apache License 2.0
      427851Updated Nov 14, 2021Nov 14, 2021
    • pileup.js

      Public
      Interactive in-browser track viewer
      JavaScript
      Apache License 2.0
      63276794Updated Oct 26, 2021Oct 26, 2021
    • slim

      Public
      Node server that listens to Spark events, aggregates statistics, and writes them to Mongo
      JavaScript
      Apache License 2.0
      51090Updated Apr 6, 2021Apr 6, 2021
    • SparkListener that converts SparkListenerEvents to JSON and forwards them to an external service via RPC.
      Scala
      Apache License 2.0
      111740Updated Apr 6, 2021Apr 6, 2021
    • spree

      Public
      Live-updating Spark UI built with Meteor
      JavaScript
      Apache License 2.0
      29190221Updated Apr 6, 2021Apr 6, 2021
    • SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more
      Scala
      Apache License 2.0
      31421Updated Nov 13, 2020Nov 13, 2020
    • Library of Stan Models for Survival Analysis
      Jupyter Notebook
      Apache License 2.0
      23123221Updated Jul 15, 2020Jul 15, 2020
    • spheroid

      Public
      Training data, models, and analysis for 3D culture cytotoxicity assays with microscopy
      Jupyter Notebook
      Apache License 2.0
      0000Updated Nov 13, 2019Nov 13, 2019
    • Probabilistic HLA typing
      OCaml
      Apache License 2.0
      435120Updated Aug 31, 2019Aug 31, 2019
    • A curated list of awesome clonality and tumor heterogeneity resources
      Apache License 2.0
      61510Updated Jun 25, 2019Jun 25, 2019
    • Modeling bead based T cell activation to optimize ex vivo culturing conditions
      Jupyter Notebook
      Apache License 2.0
      1000Updated May 13, 2019May 13, 2019
    • Code/Data repository for "Electroporation characteristics of human primary T cells"
      Jupyter Notebook
      Apache License 2.0
      0120Updated Apr 20, 2019Apr 20, 2019
    • Deploy dask-distributed on google container engine using kubernetes
      Jupyter Notebook
      Apache License 2.0
      64001Updated Apr 15, 2019Apr 15, 2019
    • Math and statistics utilities
      Scala
      Apache License 2.0
      1700Updated Feb 11, 2019Feb 11, 2019
    • pageant

      Public
      Parallel Genomic Analysis Toolkit
      41460Updated Feb 11, 2019Feb 11, 2019
    • R
      Apache License 2.0
      0000Updated Jan 28, 2019Jan 28, 2019
    • stancache

      Public
      Filecache for stan models
      Python
      Apache License 2.0
      1140Updated Jan 16, 2019Jan 16, 2019
    • Miscellaneous functionality for manipulating Apache Spark RDDs.
      Scala
      52210Updated Dec 29, 2018Dec 29, 2018
    • low-level helpers for Apache Spark libraries and tests
      Scala
      Apache License 2.0
      71610Updated Dec 29, 2018Dec 29, 2018
    • Utilities for writing tests that use Apache Spark.
      Scala
      Apache License 2.0
      42400Updated Dec 29, 2018Dec 29, 2018
    • giter8 template for the hammerlab/sbt-parent SBT plugin
      Scala
      0000Updated Dec 28, 2018Dec 28, 2018