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@genenetwork GeneNetwork

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    56 repositories

    • genenetwork2

      Public
      GeneNetwork (2nd generation)
      Python
      •
      GNU Affero General Public License v3.0
      •24•33•18•19•Updated Dec 21, 2024Dec 21, 2024

    • genenetwork3

      Public
      GeneNetwork3 REST API for data science and machine learning
      Python
      •
      GNU Affero General Public License v3.0
      •7•7•0•9•Updated Dec 20, 2024Dec 20, 2024

    • gn-gemtext-threads

      Public
      GeneNetwork gemini threads issue tracker and kanban board
      Scheme
      •
      Creative Commons Zero v1.0 Universal
      •11•8•0•2•Updated Dec 5, 2024Dec 5, 2024

    • gn-docs

      Public
      Documentation that is embedded in GN2
      Rich Text Format
      •1•1•0•0•Updated Aug 9, 2024Aug 9, 2024

    • BulkLMM.jl

      Public
      GN Archive clone: Linear mixed model genome scans for many traits
      Julia
      •
      GNU Affero General Public License v3.0
      •5•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • gn-auth-archived

      Public archive
      Moved to https://git.genenetwork.org/gn-auth/
      Python
      •
      GNU Affero General Public License v3.0
      •1•2•0•0•Updated Mar 26, 2024Mar 26, 2024

    • dump-genenetwork-database

      Public archive
      This repo has moved to
      Scheme
      •
      GNU Affero General Public License v3.0
      •0•2•0•0•Updated Aug 12, 2023Aug 12, 2023

    • genenetwork-machines

      Public archive
      Guix configuration for GeneNetwork machines
      Scheme
      •
      GNU General Public License v3.0
      •1•3•0•1•Updated Aug 10, 2023Aug 10, 2023

    • gn-proxy

      Public archive
      Racket
      •
      GNU Affero General Public License v3.0
      •3•0•0•0•Updated Aug 6, 2023Aug 6, 2023

    • cl-gn

      Public archive
      Common Lisp GeneNetwork
      Common Lisp
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Feb 13, 2023Feb 13, 2023

    • genenetwork1

      Public
      GeneNetwork (1st generation) - will be discontinued
      HTML
      •
      GNU Affero General Public License v3.0
      •8•17•0•0•Updated Jan 21, 2023Jan 21, 2023

    • gn3

      Public archive
      GeneNetwork3
      Racket
      •1•0•0•0•Updated Dec 14, 2022Dec 14, 2022

    • tissue

      Public
      Gemini-style issue tracker
      Scheme
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 10, 2022Oct 10, 2022

    • correlation_rust

      Public
      implementation of correlation with rust
      Rust
      •2•0•0•0•Updated Aug 14, 2022Aug 14, 2022

    • ccwl

      Public
      Concise Common Workflow Language
      Scheme
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Nov 25, 2021Nov 25, 2021

    • GEMMA

      Public archive
      Genome-wide Efficient Mixed Model Association
      C++
      •
      GNU General Public License v3.0
      •127•1•0•0•Updated Aug 26, 2021Aug 26, 2021

    • bxd_gxelongevity_2020

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Jul 22, 2021Jul 22, 2021

    • feedanalyser

      Public
      Fetch info from public feeds
      HTML
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jan 5, 2021Jan 5, 2021

    • guix-cwl

      Public
      CWL channel for GNU Guix - updates version is on
      Scheme
      •
      GNU General Public License v3.0
      •2•2•0•3•Updated Nov 21, 2020Nov 21, 2020

    • arvados-formula

      Public
      A formula to install and configure [Arvados](https://arvados.org)
      SaltStack
      •
      Other
      •5•0•0•0•Updated Apr 28, 2020Apr 28, 2020

    • covid-19-bh20

      Public
      COVID-19 Biohackathon April 5-11 2020
      GNU General Public License v3.0
      •33•1•0•0•Updated Mar 15, 2020Mar 15, 2020

    • singleCellRshiny

      Public
      R
      •1•0•0•0•Updated Mar 3, 2020Mar 3, 2020

    • sparqling-genomics

      Public
      Ontologies, RDF-generators, and a web interface for querying it all.
      C
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Jul 19, 2019Jul 19, 2019

    • Teaching_CTC2019

      Public
      Materials for R/qtl2 tutorial for CTC 2019
      Jupyter Notebook
      •
      Other
      •1•0•0•0•Updated Jun 9, 2019Jun 9, 2019

    • rust-qtlreaper

      Public
      Rust
      •
      MIT License
      •3•0•0•0•Updated May 15, 2019May 15, 2019

    • mediKanren

      Public
      Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
      Scheme
      •
      MIT License
      •53•1•0•0•Updated May 7, 2019May 7, 2019

    • purescript-genetics-browser

      Public
      Purescript-based genome and genetics browser
      PureScript
      •
      MIT License
      •3•0•0•0•Updated Feb 22, 2019Feb 22, 2019

    • GSoC

      Public
      OBF Google Summer of Code
      61•0•0•0•Updated Jan 31, 2019Jan 31, 2019

    • cwltool

      Public
      Common Workflow Language reference implementation
      Python
      •
      Apache License 2.0
      •231•0•0•0•Updated Dec 26, 2018Dec 26, 2018

    • schema_salad

      Public
      Semantic Annotations for Linked Avro Data
      Python
      •
      Apache License 2.0
      •62•0•0•0•Updated Dec 26, 2018Dec 26, 2018