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    • A napari plugin for tracking with motile
      Python
      BSD 3-Clause "New" or "Revised" License
      35306Updated Dec 9, 2024Dec 9, 2024
    • ilpy

      Public
      Unified python wrappers for popular ILP solvers
      C++
      MIT License
      2342Updated Dec 8, 2024Dec 8, 2024
    • motile

      Public
      Multi-Object Tracker using Integer Linear Equations
      Python
      MIT License
      527183Updated Dec 8, 2024Dec 8, 2024
    • quac

      Public
      Quantitative Attributions with Counterfactuals
      Python
      MIT License
      0061Updated Dec 6, 2024Dec 6, 2024
    • blinx paper
      TeX
      1000Updated Dec 6, 2024Dec 6, 2024
    • witty

      Public
      A "well-in-time" compiler for python: use cython to compile pyx modules at runtime.
      Python
      MIT License
      1101Updated Dec 2, 2024Dec 2, 2024
    • A toolbox for tracking with motile, including constructing candidate graphs and computing common features.
      Python
      1422Updated Nov 27, 2024Nov 27, 2024
    • A spatial graph datastructure for python
      C++
      MIT License
      1330Updated Nov 20, 2024Nov 20, 2024
    • Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
      Python
      MIT License
      10352Updated Nov 5, 2024Nov 5, 2024
    • daisy

      Public
      Block-wise task scheduling for large nD volumes.
      Python
      MIT License
      172741Updated Oct 28, 2024Oct 28, 2024
    • BSD 3-Clause "New" or "Revised" License
      1000Updated Oct 25, 2024Oct 25, 2024
    • Pytorch Models
      Python
      12626Updated Oct 9, 2024Oct 9, 2024
    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      MIT License
      568092Updated Sep 25, 2024Sep 25, 2024
    • napari

      Public
      napari: a fast, interactive, multi-dimensional image viewer for python
      Python
      BSD 3-Clause "New" or "Revised" License
      426000Updated Sep 16, 2024Sep 16, 2024
    • blinx

      Public
      Python
      2350Updated Sep 3, 2024Sep 3, 2024
    • Scripts and helpers for the neuroglancer WebGL viewer.
      Python
      13600Updated Aug 30, 2024Aug 30, 2024
    • transformer models gone blinky
      Python
      0000Updated Aug 9, 2024Aug 9, 2024
    • animation of blinking in the style of 3blue1brown
      Python
      0000Updated Aug 9, 2024Aug 9, 2024
    • Cell Tracking Experiments Scripts
      Python
      0300Updated Jul 29, 2024Jul 29, 2024
    • synister

      Public
      Neurotransmitter prediction from EM.
      Python
      51001Updated Jun 25, 2024Jun 25, 2024
    • A napari plugin for cellulus
      Python
      BSD 3-Clause "New" or "Revised" License
      0350Updated Jun 18, 2024Jun 18, 2024
    • pycookie

      Public
      A cookie cutter repository for python projects.
      Python
      2100Updated May 31, 2024May 31, 2024
    • Tools to segment graphs and volumes
      Python
      7101Updated May 2, 2024May 2, 2024
    • A package for Coordinates, Rois and common operations in Coordinate spaces
      Python
      MIT License
      3100Updated Apr 26, 2024Apr 26, 2024
    • A minimal LaTeX document to be used as a template for papers.
      TeX
      1100Updated Apr 18, 2024Apr 18, 2024
    • A dataset of fictional cells with protein aggregates.
      Python
      0010Updated Apr 17, 2024Apr 17, 2024
    • cellulus

      Public
      Unsupervised Instance Segmentation in Microscopy
      Python
      MIT License
      12112Updated Apr 3, 2024Apr 3, 2024
    • StarGAN v2 - Official PyTorch Implementation (CVPR 2020)
      Python
      Other
      660100Updated Mar 9, 2024Mar 9, 2024
    • dacapo

      Public
      Python
      63163Updated Feb 13, 2024Feb 13, 2024
    • livseg

      Public
      Python
      1000Updated Dec 20, 2023Dec 20, 2023