Skip to content

@fowler-lab Predicting AMR de novo

Change the repository type filter

All

    Repositories list

    21 repositories

    • intreg

      Public
      A Python implementation of interval regression
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • predict-rifampicin-resistance

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • tb-bdq-cat

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•1•Updated Dec 14, 2024Dec 14, 2024

    • validate-myco-amr

      Public
      Data and code to validate the second version of the WHO catalogue of resistance-associated variants in tuberculosis
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • tb-rnap-compensation

      Public
      Investigation of the role of compensatory mutations in rifamycin resistance in M. tuberculosis
      Jupyter Notebook
      •
      MIT License
      •2•2•0•0•Updated Nov 29, 2024Nov 29, 2024

    • sbmlcore

      Public
      Collection of core classes and functions for structure-based machine learning to predict antimicrobial resistance
      Python
      •
      MIT License
      •0•3•3•0•Updated Aug 21, 2024Aug 21, 2024

    • amygda

      Public
      Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre
      Python
      •
      Other
      •4•1•0•0•Updated Jun 6, 2024Jun 6, 2024

    • predict-pyrazinamide-resistance

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 6, 2024Mar 6, 2024

    • who_catalogue_conversion

      Public
      Convert mutations from the WHO TB catalogue to GARC
      Python
      •
      Other
      •0•3•0•0•Updated Feb 9, 2024Feb 9, 2024

    • bashthebug

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2023Oct 29, 2023

    • pyniverse

      Public
      generic Python package for parsing, analysing and plotting Zooniverse data classification export files
      Python
      •
      MIT License
      •1•6•0•0•Updated Oct 29, 2023Oct 29, 2023

    • Protein-Mutation-Viewer

      Public
      HTML
      •1•1•0•3•Updated May 1, 2023May 1, 2023

    • cryptic-ecoffs

      Public
      Data and code to reproduce the figures and tables in the CRyPTIC ECOFF/ECV paper
      Jupyter Notebook
      •
      Other
      •2•1•0•0•Updated Mar 9, 2023Mar 9, 2023

    • molstar-mutation

      Public
      A comprehensive macromolecular library adapted for visualisation of protein mutations
      TypeScript
      •
      MIT License
      •160•0•0•16•Updated Jan 7, 2023Jan 7, 2023

    • tb-rbfe-setup

      Public
      Files and scripts to rerun A90V DNAG and S450L RBFE calculations
      Shell
      •
      MIT License
      •0•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • bashthebug-consensus-dataset

      Public
      Dataset of classifications made by BashTheBug volunteers used to decide how to form a consensus
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 19, 2022Jul 19, 2022

    • sbmlcore-tutorials

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 22, 2022Jun 22, 2022

    • Inh_resistance

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 25, 2022May 25, 2022

    • tb-lineage-mutations

      Public
      Reference list of lineage-defining mutations as derived from SNP-IT
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 6, 2022Feb 6, 2022

    • jupyter-notebook-example

      Public
      A prototype jupyter notebook
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 10, 2021Oct 10, 2021

    • seqtreat

      Public
      Python code to validate the spreadsheets containing M. tuberculosis AST data donated to the project. Likely to expand in future.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2020Oct 28, 2020