Repositories list

• chemutils

  Public
  Convenience functions wrapping pubchempy

  Python

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Jan 18, 2025Jan 18, 2025

• hong2p

  Public
  Extracting / processing / storing fluorescence traces, and associating them with odor information.

  Python

  •2•2•2•0•Updated Dec 19, 2024Dec 19, 2024

• natmix

  Public
  Analysis common to both KC and AL experiments involving 5-component natural mixtures.

  Python

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• al_analysis

  Public
  Analysis for experiments in antennal lobe ramping concentrations of each component in odor pairs

  Python

  •0•2•0•0•Updated Dec 19, 2024Dec 19, 2024

• olfsysm

  Public
  Drosophila olfactory system modeling.

  C++

  •0•0•0•0•Updated Feb 10, 2024Feb 10, 2024

• imagej_macros

  Public
  Python

  •0•0•0•0•Updated Feb 1, 2024Feb 1, 2024

• al_atlas

  Public
  HTML

  •1•0•0•0•Updated Oct 23, 2023Oct 23, 2023

• multi_tracker

  Public
  Multiple object tracking for single camera in ROS.

  Python

  •

  MIT License

  •15•0•1•0•Updated Jul 24, 2023Jul 24, 2023

• nagel_laminar

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 20, 2023Jul 20, 2023

• kc_natural_mixes

  Public
  Analysis of KC experiments presenting ~5 component "natural" and "random" control mixtures.

  Python

  •0•0•0•0•Updated Jul 1, 2023Jul 1, 2023

• 6channel_quick_disconnect

  Public
  Simultaneous quick disconnect for 6 independent gas lines.

  1•1•0•0•Updated Jun 27, 2023Jun 27, 2023

• metabolic_dists

  Public
  Python

  •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

• protein_txt_writer

  Public
  Python

  •0•0•0•0•Updated Nov 4, 2022Nov 4, 2022

• remy_olf_accessories

  Public
  Useful files for multichannel olfactometer use

  0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

• 11channel_olfactometer

  Public
  G-code

  •1•0•0•0•Updated Jul 13, 2022Jul 13, 2022

• emily_olfactometer_configs

  Public
  Python

  •0•0•0•0•Updated May 20, 2022May 20, 2022

• hong_setup

  Public
  Scripts and files for reproducing the same workstation environments.

  Jinja

  •0•0•0•0•Updated Jan 6, 2022Jan 6, 2022

• elena_olfactometer_configs

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 16, 2021Dec 16, 2021

• elena_analysis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 15, 2021Dec 15, 2021

• pfsense_tools

  Public
  Attempt to automate pfsense VPN client setup.

  Python

  •0•0•0•0•Updated Apr 15, 2021Apr 15, 2021

• luo2010

  Public
  Replication of modeling in Luo et al. 2010 (PNAS) for practice and as a starting point.

  Python

  •0•1•0•0•Updated Apr 15, 2021Apr 15, 2021

• matlab_kc_plane

  Public
  Remy's most recent single plane KC analysis.

  MATLAB

  •0•1•0•0•Updated Mar 27, 2021Mar 27, 2021

• labjack

  Public
  ROS package for labjack data acquisition that streams to CSV.

  Python

  •0•2•0•0•Updated Feb 5, 2021Feb 5, 2021

• vial_holders

  Public
  3D models of parts to hold 20mL scitillation vials.

  0•0•0•0•Updated Jan 21, 2021Jan 21, 2021

• AlvarezSalvado_ElementaryTransformations

  Public
  Data and code for Alvarez-Salvado et al. "Elementary sensory-motor transformations underlying olfactory navigation in walking fruit flies"

  MATLAB

  •

  MIT License

  •3•0•0•0•Updated Dec 7, 2020Dec 7, 2020

• neuprint_helper

  Public
  Python

  •0•0•0•0•Updated Jun 2, 2020Jun 2, 2020

• r_neuprint_helper

  Public
  Shell

  •0•0•0•0•Updated Jun 2, 2020Jun 2, 2020

• hong_matlab

  Public
  MATLAB scripts to wrap a Python module for more seamless interaction with it.

  MATLAB

  •0•0•0•0•Updated May 26, 2020May 26, 2020

• automate2p

  Public
  For automating our ThorLabs two-photon acquisition habits.

  Python

  •0•0•0•0•Updated Apr 4, 2020Apr 4, 2020

• cutpaste_arduino_stimuli

  Public
  Upload-to-start Arduino stimulus delivery.

  Python

  •1•0•0•0•Updated Mar 10, 2020Mar 10, 2020