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    • Repository for suggesting new lineages that should be added to the current scheme
      Jupyter Notebook
      Other
      981k621Updated Dec 21, 2024Dec 21, 2024
    • The latest lineage assignments from pangolin.
      Python
      GNU General Public License v3.0
      2810Updated Nov 21, 2024Nov 21, 2024
    • Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
      PureBasic
      GNU General Public License v3.0
      23050Updated Nov 21, 2024Nov 21, 2024
    • hedgehog

      Public
      Spikey SARS-CoV-2 sequence based lineage set assignment
      Python
      GNU General Public License v3.0
      3401Updated Oct 21, 2024Oct 21, 2024
    • HTML
      131631Updated Oct 16, 2024Oct 16, 2024
    • pangolin

      Public
      Software package for assigning SARS-CoV-2 genome sequences to global lineages.
      Python
      GNU General Public License v3.0
      106430154Updated Sep 23, 2024Sep 23, 2024
    • grinch

      Public
      global report investigating novel coronavirus haplotypes
      Python
      GNU General Public License v3.0
      2632Updated Sep 2, 2024Sep 2, 2024
    • Python
      Other
      174431Updated Nov 27, 2023Nov 27, 2023
    • scorpio

      Public
      serious constellations of reoccurring phylogenetically-independent origin
      Python
      GNU General Public License v3.0
      43960Updated Oct 11, 2023Oct 11, 2023
    • 0000Updated Oct 15, 2022Oct 15, 2022
    • Store of the trained model for pangolin to access.
      PureBasic
      GNU General Public License v3.0
      135560Updated Oct 4, 2022Oct 4, 2022
    • quokka

      Public
      QUality Of Known Klusters Assessed
      Python
      GNU General Public License v3.0
      0000Updated May 11, 2022May 11, 2022
    • llama

      Public archive
      Local Lineage and Monophyly Assessment
      Python
      GNU General Public License v3.0
      31640Updated Aug 5, 2021Aug 5, 2021
    • CSS
      Other
      1740Updated Jul 8, 2021Jul 8, 2021
    • lineages

      Public archive
      Resources for calling and describing the circulating lineages of SARS-CoV-2
      Python
      Other
      103740Updated Apr 6, 2021Apr 6, 2021
    • Python
      MIT License
      6100Updated Feb 18, 2021Feb 18, 2021
    • pipeline for training pangoLEARN model
      Python
      GNU General Public License v3.0
      1300Updated Feb 14, 2021Feb 14, 2021
    • Python
      GNU General Public License v3.0
      0000Updated Feb 3, 2021Feb 3, 2021