Repositories list

• benchmark

  Public
  TeX

  •

  MIT License

  •3•1•0•0•Updated Jun 11, 2021Jun 11, 2021

• chloroplast_landscape

  Public
  Chloroplast landscape for different plant species

  MIT License

  •0•0•14•0•Updated Mar 10, 2021Mar 10, 2021

• chloroExtractor

  Public
  Perl

  •

  MIT License

  •8•4•17•0•Updated May 1, 2019May 1, 2019

• fastg-parser

  Public
  Parses the FastG files and extracts target assemblies

  Perl

  •

  MIT License

  •0•0•2•0•Updated May 1, 2019May 1, 2019

• docker

  Public
  Build scripts for docker images to run chloroExtractor

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Apr 8, 2019Apr 8, 2019

• chloroExtractor-testsuite

  Public
  Tests for our chloroExtractor

  Perl

  •

  MIT License

  •0•0•0•0•Updated Apr 8, 2019Apr 8, 2019

• fast-plast_docker

  Public
  A docker solution for Fast-Plast (https://github.com/mrmckain/Fast-Plast)

  Dockerfile

  •0•0•0•0•Updated Oct 15, 2018Oct 15, 2018

• GetOrganelle_docker

  Public
  A docker solution for GetOrganelle (https://github.com/Kinggerm/GetOrganelle)

  Dockerfile

  •0•0•0•0•Updated Oct 1, 2018Oct 1, 2018

• IOGA_docker

  Public
  A docker solution for IOGA (https://github.com/holmrenser/IOGA)

  Dockerfile

  •0•0•0•0•Updated Sep 27, 2018Sep 27, 2018

• NOVOPlasty_docker

  Public
  A docker solution for NOVOPlasty (https://github.com/ndierckx/NOVOPlasty)

  Dockerfile

  •0•0•0•0•Updated Sep 26, 2018Sep 26, 2018

• ORG.Asm_docker

  Public
  A docker solution for ORG.Asm (https://git.metabarcoding.org/org-asm/org-asm)

  MIT License

  •0•0•0•0•Updated Sep 26, 2018Sep 26, 2018

• screening_container

  Public
  This container is used to screen for new chloroplasts

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jul 24, 2018Jul 24, 2018

• fastq-shuffle

  Public
  A shuffle program for FASTQ files

  Perl

  •

  MIT License

  •2•7•3•0•Updated Jul 11, 2018Jul 11, 2018

• chloroExtractor-dockerbase

  Public
  Docker base image for our chloroExtractor Docker container

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jul 9, 2018Jul 9, 2018

• simulate

  Public
  Protocol to generate simulated sequence reads for evaluation of chloroExtractor

  Shell

  •

  MIT License

  •0•0•0•0•Updated Sep 22, 2017Sep 22, 2017

• bats

  Public
  Bash Automated Testing System

  Shell

  •

  MIT License

  •517•0•0•0•Updated Sep 4, 2017Sep 4, 2017

• chloroExtractorLogo

  Public
  All stuff concerning the logo of our chloroExtractor

  MIT License

  •1•0•0•0•Updated Aug 30, 2017Aug 30, 2017

• annoBTD

  Public
  Annotation software for Verdant.

  Perl

  •1•0•0•0•Updated Aug 12, 2016Aug 12, 2016