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    16 repositories

    • sgads

      Public
      Small Games for Algorithms and Data Structures
      gamesalgorithmsddata-structuresalgorithms-datastructures
      D
      •
      MIT License
      •0•1•0•0•Updated Apr 26, 2019Apr 26, 2019

    • fastp

      Public
      An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
      C++
      •
      MIT License
      •334•0•0•0•Updated Oct 15, 2018Oct 15, 2018

    • FastQC

      Public
      A quality control analysis tool for high throughput sequencing data
      Java
      •
      GNU General Public License v2.0
      •86•0•0•0•Updated Oct 4, 2018Oct 4, 2018

    • meetups

      Public
      Content and code labs for Aalborg D meetups
      Shell
      •0•1•0•0•Updated Sep 20, 2018Sep 20, 2018

    • fastaq

      Public
      FastA/Q parser based on iopipe
      D
      •1•0•0•0•Updated Jun 11, 2018Jun 11, 2018

    • bioslad.github.io

      Public
      Promoting D and Bioinformatics
      0•0•0•0•Updated May 11, 2018May 11, 2018

    • algorithms.bio

      Public
      Implementation of bioinformatic algorithms in D
      0•0•0•0•Updated May 8, 2018May 8, 2018

    • rosalind

      Public
      D solution to rosalind.info's problems
      D
      •1•1•0•0•Updated May 5, 2018May 5, 2018

    • khmer

      Public
      In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
      Python
      •
      Other
      •295•0•0•0•Updated May 2, 2018May 2, 2018

    • Jellyfish

      Public
      A fast multi-threaded k-mer counter
      C++
      •
      GNU General Public License v3.0
      •136•0•0•0•Updated May 1, 2018May 1, 2018

    • vsearch

      Public
      Versatile open-source tool for metagenomics
      C++
      •
      Other
      •124•0•0•0•Updated Apr 30, 2018Apr 30, 2018

    • seqan

      Public
      SeqAn's official repository.
      C++
      •
      Other
      •171•0•0•0•Updated Apr 19, 2018Apr 19, 2018

    • bwa

      Public
      Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
      C
      •
      GNU General Public License v3.0
      •556•0•0•0•Updated Apr 10, 2018Apr 10, 2018

    • queue

      Public
      A basic FIFO queue module for the D programming language.
      D
      •
      MIT License
      •2•0•0•0•Updated Feb 23, 2018Feb 23, 2018

    • primer3

      Public
      Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
      C
      •
      GNU General Public License v2.0
      •66•0•0•0•Updated Feb 12, 2018Feb 12, 2018

    • seqtk

      Public
      Toolkit for processing sequences in FASTA/Q formats
      C
      •
      MIT License
      •307•0•0•0•Updated Dec 19, 2017Dec 19, 2017