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    36 repositories

    • torch-deep-retina

      Public
      PyTorch implementation of Deep Retina
      Jupyter Notebook
      •
      MIT License
      •2•10•3•1•Updated Feb 27, 2024Feb 27, 2024

    • labpack

      Public
      Lab-specific stimuli, config, and resources to be used with stimpack
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 13, 2023Nov 13, 2023

    • pyret

      Public
      Python tools for analysis of neurophysiology data
      toolsneurosciencescientific-computingelectrophysiologypython
      Python
      •
      MIT License
      •8•36•3•0•Updated Oct 2, 2023Oct 2, 2023

    • baccuslab_package

      Public
      Repo for lab-specific visprotocol configs, protocols
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 8, 2023Jun 8, 2023

    • deep-retina

      Public
      deep-retina is a project to build a convolutional neural network that can predict retinal ganglion cell responses to natural stimuli with high accuracy.
      Python
      •17•52•3•0•Updated Jun 3, 2023Jun 3, 2023

    • demo_tdr_data

      Public
      1•0•0•0•Updated Jun 1, 2023Jun 1, 2023

    • flystim

      Public
      Visual stimulus generator for neuroscience experiments
      Python
      •
      MIT License
      •2•0•0•0•Updated Oct 17, 2022Oct 17, 2022

    • kinetic-model

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 8, 2022Aug 8, 2022

    • picotui

      Public
      Lightweight, pure-Python Text User Interface (TUI) widget toolkit with minimal dependencies. Dedicated to the Pycopy project.
      Python
      •
      MIT License
      •70•0•0•0•Updated Feb 24, 2022Feb 24, 2022

    • surround-components

      Public
      Data and materials for Manu et al., 2022 PNAS
      0•0•0•0•Updated Nov 4, 2021Nov 4, 2021

    • inferring-hidden-structure-retinal-circuits

      Public
      Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`
      neuroscienceopen-sciencedatasetretina
      Python
      •
      MIT License
      •3•14•0•0•Updated Sep 11, 2021Sep 11, 2021

    • imgclass

      Public
      A project for image classification using many of the same paradigms as torchdeepretina
      Python
      •0•0•0•0•Updated Feb 20, 2020Feb 20, 2020

    • spike-sorting

      Public
      The repository for taking raw HDF5 multielectrode array recordings and identifying spikes through clustering. Should work on MATLAB versions >=2014a
      MATLAB
      •2•7•0•0•Updated Dec 10, 2019Dec 10, 2019

    • adaptation-in-parallel-pathways

      Public
      Data for Ozuysal, Kastner and Baccus, Adaptive feature detection from differential processing in parallel retinal pathways, PLOS Comp Bio 2018
      0•1•0•0•Updated Oct 23, 2018Oct 23, 2018

    • recording-software

      Public
      Super-repository for the lab's custom recording software pipeline.
      Shell
      •0•2•0•0•Updated Jul 3, 2018Jul 3, 2018

    • meactl

      Public
      MEA controller application
      C++
      •
      Other
      •0•0•0•0•Updated Feb 5, 2018Feb 5, 2018

    • blds

      Public
      Baccus Lab Data Server
      C++
      •
      Other
      •0•0•0•0•Updated Feb 2, 2018Feb 2, 2018

    • oatool

      Public
      Online analysis toolkit in Python
      Python
      •
      Other
      •1•1•0•0•Updated Feb 1, 2018Feb 1, 2018

    • meaview

      Public
      Application for visualizing data collected from the BLDS.
      C++
      •
      Other
      •0•0•0•0•Updated Dec 20, 2017Dec 20, 2017

    • shannon

      Public
      A python package for computing the mutual information and entropy for continuous and discrete data.
      Python
      •
      MIT License
      •12•32•0•0•Updated Nov 7, 2017Nov 7, 2017

    • libdata-source

      Public
      Shared library for interacting with sources of data, either multielectrode arrays or previously recorded files.
      Objective-C
      •
      Other
      •0•0•0•0•Updated May 25, 2017May 25, 2017

    • libdatafile

      Public
      A C++ library for reading and writing HDF5 recording files
      C++
      •
      Other
      •1•2•0•0•Updated May 25, 2017May 25, 2017

    • libblds-client

      Public
      Shared library for interacting the BLDS as a client, C++/Qt and Python implementations.
      C++
      •
      Other
      •0•0•0•0•Updated Apr 21, 2017Apr 21, 2017

    • stimuli

      Public
      Visual stimuli for evoking responses from vertebrate retina experiments.
      MATLAB
      •6•4•0•0•Updated Feb 10, 2017Feb 10, 2017

    • keras

      Public
      Theano-based Deep Learning library (convnets, recurrent neural networks, and more).
      Python
      •
      Other
      •19k•0•0•0•Updated Oct 25, 2016Oct 25, 2016

    • LNKS

      Public
      Linear-Nonlinear-Kinetics-Spiking(LNKS) model repository
      Python
      •0•5•2•0•Updated May 20, 2016May 20, 2016

    • retina-channel

      Public
      0•0•0•0•Updated Apr 12, 2016Apr 12, 2016

    • gknn-entropy

      Public
      Generalized k-nearest neighbor entropy estimation
      Python
      •4•6•0•0•Updated Dec 18, 2015Dec 18, 2015

    • igor

      Public
      useful utilities for dealing with igor files in experiments
      IGOR Pro
      •
      MIT License
      •0•2•1•0•Updated Dec 4, 2015Dec 4, 2015

    • High-Density-Array-Spike-Sorting

      Public
      Spike sorting code for the high density array
      MATLAB
      •0•1•0•0•Updated Aug 25, 2015Aug 25, 2015