USC Division of Biostatistics

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129 repositories

geese-simulations
Public
R
•0•0•0•0•Updated Dec 3, 2024Dec 3, 2024
aphylo
Public
Statistical inference of genetic functions in phylogenetic trees
r annotations inference phylogenetics r-package rcpparmadillo
R
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Other
•2•6•8•1•Updated Dec 3, 2024Dec 3, 2024
PM566-bots
Public
1•0•0•0•Updated Dec 2, 2024Dec 2, 2024
annoq-database
Public
Python
•0•0•1•0•Updated Nov 27, 2024Nov 27, 2024
software-dev
Public
Coding Standards for the USC Biostats group
r hpc reproducible-research standards reproducibility
HTML
•7•35•2•0•Updated Nov 21, 2024Nov 21, 2024
PM516
Public
0•0•0•0•Updated Nov 13, 2024Nov 13, 2024
partition
Public
A fast and flexible framework for data reduction in R
r data-reduction dimensionality-reduction partitional-clustering
HTML
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Other
•4•35•2•0•Updated Nov 10, 2024Nov 10, 2024
annoq-api-v2
Public
Jupyter Notebook
•1•0•3•0•Updated Nov 7, 2024Nov 7, 2024
annoq-site
Public
TypeScript
•2•0•14•1•Updated Nov 6, 2024Nov 6, 2024
PM566
Public
USC's Introduction to Health Data Science
data-science machine-learning course dataviz course-materials datascience rstats webscraping
HTML
•27•13•14•0•Updated Nov 1, 2024Nov 1, 2024
SNPs-to-Genes_SnpEff-VEP-ANNOVAR
Public
R
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MIT License
•0•0•0•0•Updated Oct 24, 2024Oct 24, 2024
GxEScanR
Public
R version of GxEScan
R
•1•7•3•1•Updated Oct 23, 2024Oct 23, 2024
annoq-api
Public
Python
•0•0•0•0•Updated Oct 21, 2024Oct 21, 2024
annoq-data-builder
Public
Shell
•0•0•3•0•Updated Oct 18, 2024Oct 18, 2024
BinaryDosage
Public
Converts VCF files to a binary format
R
•2•1•2•0•Updated Sep 26, 2024Sep 26, 2024
MRIreduce
Public
R
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The Unlicense
•0•0•0•0•Updated Sep 24, 2024Sep 24, 2024
PM566-whoami
Public
132•0•0•0•Updated Sep 16, 2024Sep 16, 2024
rbootcamp
Public
R boot camp: Scientific Computing
education tutorial r simulation scientific-computing
HTML
•16•29•5•0•Updated Aug 22, 2024Aug 22, 2024
xrnet
Public
R Package for Hierarchical Regularized Regression to Incorporate External Data
R
•3•10•1•0•Updated Aug 9, 2024Aug 9, 2024
LAsBEST
Public
Repository of USC's LA's BEST program. https://lasbest.usc.edu/
training education datascience biostatistics rstats rprogramming nih
HTML
•5•1•1•0•Updated Aug 1, 2024Aug 1, 2024
cit
Public
C++
•1•2•0•0•Updated Jun 27, 2024Jun 27, 2024
slurmR
Public
slurmR: A Lightweight Wrapper for Slurm
bioinformatics hpc rstats rpackage slurm
R
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Other
•12•58•17•1•Updated Jun 17, 2024Jun 17, 2024
AnnoQR
Public
R client wrap for AnnoQ API
R
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Other
•2•1•4•0•Updated Jun 7, 2024Jun 7, 2024
peregrine
Public
Python
•1•0•0•0•Updated May 31, 2024May 31, 2024
annoq-py
Public
Python package for annoq-api-v2
Python
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MIT License
•1•0•0•0•Updated May 8, 2024May 8, 2024
PM520
Public
PM520 Advanced Statistical Computing
statistical-computing jax
Jupyter Notebook
•2•9•0•0•Updated Apr 12, 2024Apr 12, 2024
ACDC
Public
Association of covariance to detect differential co-expression
R
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Other
•0•1•0•0•Updated Apr 9, 2024Apr 9, 2024
hJAM
Public
hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.
R
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Other
•1•9•1•1•Updated Jan 19, 2024Jan 19, 2024
.github
Public
Will contain details for our organization's landing page
0•0•0•0•Updated Dec 13, 2023Dec 13, 2023
barry
Public
barry: Your go-to motif accountant
motif ergm exponential-family graph enumeration counting-statistics change-statistics
C++
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MIT License
•0•7•1•0•Updated Nov 16, 2023Nov 16, 2023