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    13 repositories

    • RoundV_reproducibility

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 19, 2024Oct 19, 2024

    • RNA_assessment

      Public
      Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.
      HTML
      •
      MIT License
      •5•17•0•0•Updated Jul 11, 2024Jul 11, 2024

    • rna-tools

      Public
      🔧rna-tools (prev. rna-pdb-tools): a toolbox to analyze sequences, structures and simulations of RNA - docs @ http://rna-tools.rtfd.io web version http://rna-tools.online
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •43•4•0•0•Updated Jun 30, 2022Jun 30, 2022

    • viralcentre.github.io

      Public
      A ribozyme database
      SCSS
      •1.2k•0•0•0•Updated May 24, 2022May 24, 2022

    • standardized_dataset

      Public
      Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
      Shell
      •7•5•0•0•Updated Mar 30, 2021Mar 30, 2021

    • raw_dataset_and_for_assessment

      Public
      This repository includes all the submitted RNA structures in RNA-Puzzles, include the `raw_dataset` and the `normalized_dataset`
      2•1•1•0•Updated Feb 13, 2020Feb 13, 2020

    • RNA-Puzzles-toolkit-overview

      Public
      RNA-Puzzles-toolkit-overview
      Java
      •2•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • mcq4structures

      Public
      A parent project for a set of subprojects related to Mean of Circular Quantities (MCQ).
      5•0•0•0•Updated Jul 9, 2019Jul 9, 2019

    • toolkit-ansible-role

      Public
      Ansible role for RNA-Puzzles Toolkit. Contains ansible-container config and an example playbook
      MIT License
      •2•1•0•0•Updated Oct 24, 2018Oct 24, 2018

    • comparison_metrics_list

      Public
      Assessment metrics tools to compare RNA 3D structures.
      2•3•0•0•Updated Nov 27, 2017Nov 27, 2017

    • rnaqua

      Public
      Java
      •5•2•0•0•Updated Nov 26, 2017Nov 26, 2017

    • Deformation_Profile

      Public
      RNA deformation profile, to account for structure comparison in 2D
      Python
      •1•0•0•0•Updated Sep 13, 2017Sep 13, 2017

    • RNA_format

      Public
      The submission format of RNA-Puzzles
      Python
      •
      GNU General Public License v2.0
      •3•0•0•0•Updated May 25, 2017May 25, 2017