Peptone

All

10 repositories

proteinmpnn_ddg
Public
Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
Python
•
MIT License
•4•32•0•0•Updated Sep 3, 2024Sep 3, 2024
ColabDesign
Public
Making Protein Design accessible to all via Google Colab!
Python
•145•0•0•0•Updated Jun 19, 2024Jun 19, 2024
contrastive-finetuning-plms
Public
Optimizing protein language models with Sentence Transformers - ADOPT2
Python
•
Apache License 2.0
•1•3•0•0•Updated Jun 18, 2024Jun 18, 2024
nerfax
Public
An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.
proteins dynamics simulations molecular numerical jax
Jupyter Notebook
•
Apache License 2.0
•4•15•0•0•Updated Jun 12, 2024Jun 12, 2024
ADOPT
Public
ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers
Jupyter Notebook
•
MIT License
•1•16•12•0•Updated May 2, 2023May 2, 2023
pepkalc
Public
Robust simulation software for the comprehensive evaluation of protein electrostatics in unfolded state.
bioinformatics polymer simulation prediction protein biophysics protein-sequence electrostatics protonation
Python
•
Other
•1•5•0•0•Updated Aug 23, 2022Aug 23, 2022
ProteoNeMo
Public
Ongoing research training transformer models on proteome at scale
Python
•
Apache License 2.0
•1•5•3•0•Updated Aug 11, 2022Aug 11, 2022
dspp-keras
Public
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
machine-learning ai tensorflow keras prediction biotechnology database polymer biology protein-structure
Python
•
GNU Affero General Public License v3.0
•21•169•1•0•Updated Jun 15, 2022Jun 15, 2022
Machine-learning-for-proteins
Public
Listing of papers about machine learning for proteins.
GNU General Public License v3.0
•203•8•0•0•Updated Mar 15, 2021Mar 15, 2021
dspp-data
Public
Database of Structural Propensities of Proteins (dSPP) raw data repository by Peptone Inc.
machine-learning tensorflow protein-structure keras prediction dataset protein protein-sequences keras-models tensorflow-models
2•4•1•0•Updated Jun 4, 2017Jun 4, 2017