Repositories list

• WebAPI

  Public
  OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

  Java

  •

  Apache License 2.0

  •169•132•129•22•Updated Dec 27, 2024Dec 27, 2024

• dbt-synthea

  Public
  [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

  Python

  •

  Apache License 2.0

  •8•18•18•3•Updated Dec 27, 2024Dec 27, 2024

• ETL-LambdaBuilder

  Public
  CDM Builder leveraging AWS Lambda

  C#

  •

  Apache License 2.0

  •15•14•1•2•Updated Dec 26, 2024Dec 26, 2024

• drat

  Public
  drat repository for OHDSI R packages

  7•5•0•0•Updated Dec 25, 2024Dec 25, 2024

• DataQualityDashboard

  Public
  A tool to help improve data quality standards in observational data science.

  data-quality

  JavaScript

  •

  Apache License 2.0

  •97•149•54•6•Updated Dec 25, 2024Dec 25, 2024

• InspectOMOP

  Public
  InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databases following the OHDSI OMOP Common Data Model(CDM) standard v>=5.

  Python

  •

  GNU Affero General Public License v3.0

  •2•14•0•1•Updated Dec 24, 2024Dec 24, 2024

• Ares

  Public
  A Research Exploration System

  Vue

  •

  Apache License 2.0

  •7•12•34•3•Updated Dec 23, 2024Dec 23, 2024

• CohortConstructor

  Public
  R

  •

  Apache License 2.0

  •0•1•37•3•Updated Dec 23, 2024Dec 23, 2024

• OmopSketch

  Public
  R

  •

  Apache License 2.0

  •0•1•7•0•Updated Dec 22, 2024Dec 22, 2024

• ETL-Synthea

  Public
  A package supporting the conversion from Synthea CSV to OMOP CDM

  etl

  R

  •73•100•2•0•Updated Dec 20, 2024Dec 20, 2024

• gaiaDB

  Public
  A staging database and collection of transformation recipes for public place-based datasets

  Python

  •0•1•37•0•Updated Dec 20, 2024Dec 20, 2024

• gaiaCore

  Public
  An R Package for interacting with gaiaDB - part of the OHDSI GIS Gaia toolchain

  R

  •

  Apache License 2.0

  •0•2•22•0•Updated Dec 20, 2024Dec 20, 2024

• SelfControlledCaseSeries

  Public
  An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.

  hades

  R

  •8•13•11•0•Updated Dec 20, 2024Dec 20, 2024

• Andromeda

  Public
  AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.

  hades

  R

  •13•11•17•0•Updated Dec 20, 2024Dec 20, 2024

• MethodEvaluation

  Public
  An R package for the evaluation of estimation methods

  hades

  R

  •5•7•2•0•Updated Dec 19, 2024Dec 19, 2024

• Vocabulary-v5.0

  Public
  Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

  PLpgSQL

  •

  The Unlicense

  •75•223•222•9•Updated Dec 19, 2024Dec 19, 2024

• context

  Public
  A python library to create knowledge graphs for context-aware prediction modeling and more.

  Python

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• PatientLevelPrediction

  Public
  An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

  hades

  HTML

  •90•189•36•2•Updated Dec 17, 2024Dec 17, 2024

• TAB

  Public
  OHDSI Open Source Technical Advisory Board

  2•4•3•0•Updated Dec 17, 2024Dec 17, 2024

• Atlas

  Public
  ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

  JavaScript

  •

  Apache License 2.0

  •139•275•212•19•Updated Dec 17, 2024Dec 17, 2024

• DeepPatientLevelPrediction

  Public
  An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.

  hadesdeep-learning

  R

  •4•12•22•1•Updated Dec 17, 2024Dec 17, 2024

• DatabaseConnector

  Public
  An R package for connecting to databases using JDBC.

  hades

  R

  •83•55•30•2•Updated Dec 17, 2024Dec 17, 2024

• Hades

  Public
  Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.

  hades

  R

  •

  Apache License 2.0

  •13•23•15•5•Updated Dec 17, 2024Dec 17, 2024

• CommonDataModel

  Public
  Definition and DDLs for the OMOP Common Data Model (CDM)

  HTML

  •456•906•78•12•Updated Dec 16, 2024Dec 16, 2024

• PhenotypeR

  Public
  R

  •

  Apache License 2.0

  •0•1•27•0•Updated Dec 14, 2024Dec 14, 2024

• CohortGenerator

  Public
  Cohort Generation for the OMOP Common Data Model

  hades

  R

  •10•12•18•3•Updated Dec 12, 2024Dec 12, 2024

• Arachne

  Public
  Arachne Data Node web application

  TypeScript

  •

  Apache License 2.0

  •1•1•9•0•Updated Dec 12, 2024Dec 12, 2024

• CureIdRegistry

  Public
  TSQL

  •9•14•3•3•Updated Dec 11, 2024Dec 11, 2024

• Characterization

  Public
  Various types of characterizations of a target and outcome cohort.

  R

  •5•3•5•5•Updated Dec 11, 2024Dec 11, 2024

• CohortExplorer

  Public
  An R package with a Shiny viewer to explore profiles of patients in a cohort

  R

  •3•3•0•1•Updated Dec 11, 2024Dec 11, 2024