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    36 repositories

    • MorrellLab.github.io

      Public
      Morrell lab website
      HTML
      •1•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • sequence_handling

      Public
      A series of scripts to automate sequence workflows
      nanoporepipelinenext-generation-sequencingsequence-processingworkflow
      Jupyter Notebook
      •9•19•3•0•Updated Aug 30, 2024Aug 30, 2024

    • File_Conversions

      Public
      Scripts to convert between file formats for various analyses
      Python
      •5•14•0•0•Updated Aug 15, 2024Aug 15, 2024

    • WildIntrogression

      Public
      Searching for runs of IBS in introgressed wild barley
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jul 2, 2024Jul 2, 2024

    • morex_reference

      Public
      Preparation and processing steps related to all versions of the morex reference genome
      HTML
      •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

    • Soybean-CNV

      Public
      0•0•0•0•Updated May 25, 2024May 25, 2024

    • Williams82_reference

      Public
      Preparation and processing steps related to various versions of the Williams82 reference genome
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 23, 2024Feb 23, 2024

    • cowpea_annotation

      Public
      annotating cowpea SNPs
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • BAD_Mutations

      Public
      Deleterious mutation prediction pipeline
      Python
      •
      MIT License
      •5•14•18•0•Updated Dec 27, 2023Dec 27, 2023

    • Barley_Mutated

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 16, 2023Sep 16, 2023

    • captured_50x_BED

      Public
      Scripts used to make the captured_50x_partsRef.bed
      HTML
      •0•0•0•0•Updated May 8, 2023May 8, 2023

    • NorthAmerica_Fst

      Public
      Information related to the North American breeding programs Fst study
      R
      •1•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • Cowpea_Pangenome

      Public
      Code for the cowpea pan-genome project
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 4, 2022Nov 4, 2022

    • Locus_HvUGT13248

      Public
      Locus of interest for Gerit Bethke's project. Panel includes wild, landrace, and elite samples that were previously published in other studies.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

    • Barley_NAM_Parents

      Public
      Processing scripts and documentation for the 2-row and 6-row NAM parents
      Shell
      •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

    • DoesNaughtCompute

      Public
      Code and example datasets for Does[0]Compute
      HTML
      •3•12•0•0•Updated Dec 2, 2021Dec 2, 2021

    • Context_Variants_Soy

      Public
      The nature and context of variants and new mutations in soybean.
      HTML
      •0•0•0•0•Updated Nov 5, 2021Nov 5, 2021

    • Nanopore

      Public
      Lab-specific protocols and data handling for Nanopore sequencing with the MinION.
      Shell
      •0•1•0•0•Updated Aug 12, 2021Aug 12, 2021

    • SNP_Utils

      Public
      Extract SNP positions from BLAST XML and SAM formats
      Python
      •1•1•0•0•Updated May 7, 2021May 7, 2021

    • SNPMeta

      Public
      SNPMeta collects metadata for SNP markers from BLAST searches against public databases.
      Python
      •1•2•0•0•Updated Apr 16, 2021Apr 16, 2021

    • PopGenTheory

      Public
      Informal discussion group centered on population genetics and evolutionary genetics theory.
      2•2•0•0•Updated Feb 29, 2020Feb 29, 2020

    • Deleterious_GP

      Public
      Deleterious mutations in a genomic prediction experiment
      R
      •0•6•0•0•Updated Sep 10, 2019Sep 10, 2019

    • IPK_Landraces

      Public
      HTML
      •0•0•0•0•Updated Jun 13, 2019Jun 13, 2019

    • Env_Assoc

      Public
      Environmental Associations project
      R
      •1•0•0•0•Updated Jun 13, 2019Jun 13, 2019

    • Nanopore_sequencing

      Public
      This is for Nanopore sequencing.
      1•0•0•0•Updated May 7, 2019May 7, 2019

    • LabUtilities

      Public
      Melting pot of useful scripts from lab members
      0•0•0•0•Updated Apr 22, 2019Apr 22, 2019

    • Soy_Downsampling

      Public
      Processing scripts and documentation for the soybean downsampling sub-project
      Shell
      •0•0•0•0•Updated Oct 9, 2018Oct 9, 2018

    • SNPtoSEQ

      Public
      Capture contextual sequences for a SNP
      Python
      •1•0•0•0•Updated Jun 12, 2017Jun 12, 2017

    • Journals

      Public
      Recent finds in journals covering genetics, genomics, and evolutionary biology.
      1•2•0•0•Updated Apr 17, 2017Apr 17, 2017

    • sequence_accessories

      Public
      Accessory scripts for sequence_handling
      Shell
      •0•1•0•0•Updated Mar 21, 2017Mar 21, 2017