Repositories list

• Macosko-Pipelines

  Public
  R

  •1•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• pknn_repo

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Dec 5, 2024Dec 5, 2024

• WDLslidetags

  Public
  R

  •0•0•0•0•Updated May 22, 2024May 22, 2024

• brain-atlas

  Public
  Scripts for analyzing brain atlas data

  Python

  •

  MIT License

  •1•8•0•1•Updated Mar 26, 2024Mar 26, 2024

• slideseq-tools

  Public
  Tools for analyzing Slide-seq data

  python

  Python

  •8•31•5•1•Updated Oct 30, 2023Oct 30, 2023

• vitessce

  Public
  Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

  JavaScript

  •

  MIT License

  •44•0•0•0•Updated Dec 16, 2021Dec 16, 2021

• cerebellum-atlas-analysis

  Public
  Code and scripts used in analysis of snRNAseq cerebellar cortex atlas

  HTML

  •3•9•1•0•Updated Oct 11, 2021Oct 11, 2021

• colormap

  Public
  output rgb or hex colormaps

  JavaScript

  •

  MIT License

  •34•0•0•0•Updated Aug 10, 2021Aug 10, 2021

• pyro-util

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated May 31, 2021May 31, 2021

• PuckCaller

  Public
  Matlab package for image processing and base calling

  MATLAB

  •3•2•0•0•Updated Oct 7, 2020Oct 7, 2020

• lab-sc-gcp

  Public
  Python package enabling easy set up of GCP projects for lab-wide interactive single cell analysis.

  Python

  •0•1•0•0•Updated Jul 8, 2020Jul 8, 2020

• glsl-colormap

  Public
  colormaps for glsl shaders

  JavaScript

  •

  BSD 2-Clause "Simplified" License

  •5•0•0•0•Updated Oct 21, 2016Oct 21, 2016