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    • Julia
      Apache License 2.0
      3000Updated Feb 19, 2024Feb 19, 2024
    • Julia
      GNU General Public License v3.0
      2000Updated Sep 10, 2023Sep 10, 2023
    • concRt.jl

      Public
      Julia
      MIT License
      2000Updated Aug 31, 2023Aug 31, 2023
    • Julia
      5000Updated Jul 26, 2023Jul 26, 2023
    • This is the official repository for the "doggo dot jl" YouTube channel (fka "julia for talented amateurs").
      HTML
      MIT License
      57000Updated Jul 17, 2023Jul 17, 2023
    • Some code for monkeypox
      Julia
      MIT License
      2100Updated Feb 25, 2023Feb 25, 2023
    • Code to support the paper "Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year"
      R
      1000Updated Feb 22, 2023Feb 22, 2023
    • R package that offers access to the CoronaNet policy database of government responses to COVID-19.
      R
      Other
      1000Updated Feb 2, 2023Feb 2, 2023
    • High level functions for analyzing the output of simulations
      Julia
      MIT License
      14000Updated Jan 31, 2023Jan 31, 2023
    • COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.
      Julia
      MIT License
      1000Updated Jan 18, 2023Jan 18, 2023
    • Code for reproducing the results from the preprint "Estimating the date of emergence of an epidemic outbreak from detection data: Applications to COVID-19".
      R
      MIT License
      2000Updated Jan 13, 2023Jan 13, 2023
    • Paper replication package.
      Julia
      MIT License
      1000Updated Dec 31, 2022Dec 31, 2022
    • EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.
      Jupyter Notebook
      MIT License
      1000Updated Dec 23, 2022Dec 23, 2022
    • R
      Other
      66000Updated Nov 11, 2022Nov 11, 2022
    • .github

      Public
      Special repository containing the profile directory of JuliaEpi.
      MIT License
      0300Updated Nov 8, 2022Nov 8, 2022
    • Bayesian Nowcasting with application to COVID-19 fatalities in Sweden
      R
      1000Updated Nov 6, 2022Nov 6, 2022
    • Julia for Epidemiology - With a Scientific Machine Learning Perspective.
      Julia
      3200Updated Oct 29, 2022Oct 29, 2022
    • This repository contains the implementation of the model described in the paper "Predicting the impact of COVID-19 vaccination campaigns - a flexible age-dependent spatially-stratified predictive model, accounting for multiple viral variants and vaccines".
      Julia
      MIT License
      2000Updated Oct 20, 2022Oct 20, 2022
    • Teaching material for Halle Summer School 2022: Bayesian inference of infectious disease ODE models in R
      HTML
      MIT License
      1100Updated Sep 12, 2022Sep 12, 2022
    • Jupyter Notebook
      Apache License 2.0
      4000Updated Sep 2, 2022Sep 2, 2022
    • linelist

      Public
      R package for handing linelist data
      R
      Other
      4000Updated Aug 31, 2022Aug 31, 2022
    • Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.
      JavaScript
      MIT License
      62900Updated Aug 13, 2022Aug 13, 2022
    • ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).
      Julia
      MIT License
      3100Updated Aug 13, 2022Aug 13, 2022
    • Jupyter Notebook
      Apache License 2.0
      17000Updated Aug 8, 2022Aug 8, 2022
    • ColPrac

      Public
      Contributor's Guide on Collaborative Practices for Community Packages
      17000Updated Aug 5, 2022Aug 5, 2022
    • Repository hosting organisation-level discussions for JuliaEpi to broadcast news, create conversation in the community, answer questions, and share ideas.
      MIT License
      0100Updated Aug 4, 2022Aug 4, 2022
    • COVID-19 integrated surveillance data provided by the Italian Institute of Health and deconvolved via UnrollingAverages.jl.
      Julia
      Other
      4100Updated Aug 4, 2022Aug 4, 2022
    • Materials for 2022 CANMOD Workshop on Compositional Methods for Health Modeling
      HTML
      BSD 2-Clause "Simplified" License
      5000Updated Aug 3, 2022Aug 3, 2022
    • Public shared code for doing scenario forecasting and creating reports for various governmental entities.
      R
      GNU General Public License v3.0
      47000Updated Aug 3, 2022Aug 3, 2022
    • EpiNow2

      Public
      Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
      HTML
      Other
      32000Updated Aug 2, 2022Aug 2, 2022