Repositories list

• NLP-Plant-Phenotypes

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

• Plant-data

  Public
  Documenting the collection, preprocessing, and merging of a dataset of plant genes and associated phenotype descriptions.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jul 21, 2023Jul 21, 2023

• GOMAP-singularity

  Public
  GOMAP-Singularity is the containerized version of GOMAP

  singularitygene-ontologyfunctional-annotation

  Shell

  •

  MIT License

  •5•12•10•0•Updated Jul 16, 2023Jul 16, 2023

• GOMAP

  Public
  gene-ontologyfunctional-annotation

  R

  •

  MIT License

  •3•4•1•4•Updated May 22, 2023May 22, 2023

• GOMAP-img-build

  Public
  The files to build singularity images for GOMAP pipeline

  Shell

  •1•1•0•0•Updated May 2, 2023May 2, 2023

• GOMAP-base

  Public
  Singularity

  •1•1•0•0•Updated Sep 10, 2022Sep 10, 2022

• GOMAP-Paper-2019.1

  Public
  Data, code, and results for our paper Standardized genome-wide function prediction enables comparative functional genomics: a new application area for Gene Ontologies in plants (https://doi.org/10.1093/gigascience/giac023). If you use any of our code or results in a scientific publication, we would be grateful if you cite the paper.

  Ruby

  •

  Creative Commons Zero v1.0 Universal

  •1•1•7•0•Updated Apr 21, 2022Apr 21, 2022

• PhyloGO

  Public
  Tools for (Gene) Ontology-Based Phylogenetics Methods

  phylogenetic-treesphylogeneticsgene-ontology

  Ruby

  •

  Mozilla Public License 2.0

  •0•0•0•0•Updated Jul 25, 2020Jul 25, 2020

• GOMAP-boilerplate

  Public
  This is the basic SLURM job files necessary to run GOMAP on various HPC clusters

  Shell

  •1•2•0•0•Updated Sep 27, 2019Sep 27, 2019

• maize-GAMER

  Public
  The raw proof-of-concept scripts for maize-GAMER project

  R

  •

  MIT License

  •2•3•1•0•Updated Jul 25, 2018Jul 25, 2018

• coregg

  Public
  Java

  •0•1•0•0•Updated Nov 2, 2017Nov 2, 2017