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    • brainsss

      Public
      Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)
      Jupyter Notebook
      4522Updated Dec 19, 2024Dec 19, 2024
    • Python
      1030Updated Dec 19, 2024Dec 19, 2024
    • neurite

      Public
      Neural networks toolbox focused on medical image analysis
      Python
      Apache License 2.0
      67000Updated Dec 9, 2024Dec 9, 2024
    • stimpack

      Public
      Precise and flexible generation of stimuli for neuroscience experiments.
      Python
      GNU General Public License v3.0
      2771Updated Nov 11, 2024Nov 11, 2024
    • multistim

      Public
      server/client and gui for presenting audio and visual stimuli to fruit flies
      Python
      MIT License
      0000Updated Nov 2, 2024Nov 2, 2024
    • bifrost

      Public
      Template building and multi-modal registration
      Python
      MIT License
      3420Updated Oct 18, 2024Oct 18, 2024
    • flyvr

      Public
      Python
      Other
      0000Updated Aug 26, 2024Aug 26, 2024
    • Analysis environment for visprotocol imaging experiments
      Python
      MIT License
      1200Updated Aug 25, 2024Aug 25, 2024
    • labpack

      Public
      Lab-specific stimuli, config, and resources to be used with stimpack
      Python
      GNU General Public License v3.0
      1110Updated Jul 17, 2024Jul 17, 2024
    • Visual stimulation protocol and metadata handler for flystim experiments
      Python
      MIT License
      0030Updated May 22, 2024May 22, 2024
    • MATLAB
      0000Updated Mar 22, 2024Mar 22, 2024
    • modules

      Public
      Custom `lmod` modules for use on Sherlock
      Lua
      0000Updated Jan 29, 2024Jan 29, 2024
    • flystim

      Public
      Visual stimulus generator for neuroscience experiments
      Python
      MIT License
      2460Updated Jan 24, 2024Jan 24, 2024
    • Unsupervised Learning for Image Registration
      Python
      Apache License 2.0
      584000Updated Jun 21, 2023Jun 21, 2023
    • pystrum

      Public
      A general library of python tools
      Python
      12000Updated Jun 21, 2023Jun 21, 2023
    • Python
      0000Updated Jun 9, 2023Jun 9, 2023
    • flyrpc

      Public
      Library for managing server/client interactions
      Python
      Other
      0000Updated Jun 2, 2023Jun 2, 2023
    • pijm

      Public
      PIJM is just matplotlib
      Python
      MIT License
      0000Updated Sep 3, 2022Sep 3, 2022
    • brainsss2

      Public
      refactor of the brainsss repo for 2-photon imaging analysis
      Jupyter Notebook
      MIT License
      00100Updated Aug 9, 2022Aug 9, 2022
    • Library for analyzing Drosophila Activity Monitor data
      Jupyter Notebook
      Other
      0100Updated Jul 11, 2022Jul 11, 2022
    • ANTsPy

      Public
      Advanced Normalization Tools in Python
      Python
      Apache License 2.0
      164000Updated Jun 29, 2022Jun 29, 2022
    • python scripts for the ball rig with auditory and visual stimuli
      Python
      MIT License
      0000Updated Dec 27, 2021Dec 27, 2021
    • Python
      MIT License
      2000Updated Nov 23, 2021Nov 23, 2021
    • Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.
      Python
      Apache License 2.0
      0100Updated Sep 2, 2021Sep 2, 2021
    • fictrac

      Public
      A webcam-based method for tracking spherical motion and generating fictive animal paths.
      C++
      Other
      28100Updated Dec 15, 2020Dec 15, 2020
    • Commonly used containers and scripts to build them
      Makefile
      0000Updated Oct 21, 2020Oct 21, 2020
    • Jupyter Notebook
      0000Updated Sep 25, 2020Sep 25, 2020
    • dataflow

      Public
      Jupyter Notebook
      1000Updated Mar 10, 2020Mar 10, 2020
    • ipp-tools

      Public
      Collection of IPyParallel tools and helper scripts
      Python
      MIT License
      1000Updated Jun 29, 2017Jun 29, 2017
    • 2pstim

      Public
      Custom-written code for visual stimulus presentation (Clark et al. 2011)
      C++
      0000Updated Feb 6, 2017Feb 6, 2017