Repositories list

• nf-ncov-voc

  Public
  A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

  Python

  •

  MIT License

  •5•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• covid-19-signal

  Public
  Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

  Python

  •

  MIT License

  •25•1•0•0•Updated Jul 30, 2022Jul 30, 2022

• COVID-MVP

  Public
  COVID-MVP is an interactive heatmap based visualization tool for SARS-CoV-2. It tracks mutations along with their functional impact and prevalence in Variants of Concern and Interest in near-real time. COVID-MVP is developed in collaboration with nf-ncov-voc https://github.com/cidgoh/nf-ncov-voc as back-end genomics workflow.

  Python

  •

  MIT License

  •2•0•0•0•Updated Apr 22, 2022Apr 22, 2022

• covseq_McGill

  Public
  McGill SARS-CoV2 Documentation

  Python

  •1•0•0•0•Updated Nov 27, 2020Nov 27, 2020

• irida-plugin-viral-amplicon-consensus-variants

  Public
  Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes

  microbial-genomicsvariant-callingviral-genomics+ 1sequence-analysis

  Java

  •

  Apache License 2.0

  •0•0•1•0•Updated Nov 21, 2020Nov 21, 2020

• covizu

  Public
  Rapid analysis and visualization of coronavirus genome variation

  Python

  •

  MIT License

  •20•2•0•0•Updated Nov 12, 2020Nov 12, 2020

• ncov-tools

  Public
  Small collection of tools for performing quality control on coronavirus sequencing data and genomes

  Python

  •

  MIT License

  •16•0•0•0•Updated Nov 12, 2020Nov 12, 2020