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    11 repositories

    • snakemake-pipelines

      Public
      snakemake-implemented version of Andrea's analysis pipeline
      HTML
      •
      MIT License
      •1•1•0•0•Updated Aug 1, 2017Aug 1, 2017

    • gloria_soria_ddRAD_2015

      Public
      code in support of the tsetse ddRAD paper
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 1, 2016Nov 1, 2016

    • gmm-to-gff-transcripts-vs-snps

      Public
      Pipeline used to incorporate RNA-seq based transcriptomics information from Glossina morsitans morsitans into the Glossina fuscipes fuscipes annotation information used to characterize SNPs predicted to be significant in G. f. f.
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 2, 2016Aug 2, 2016

    • argot2-batch-data-prep

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 23, 2016Mar 23, 2016

    • format-collection-sheets

      Public
      Performs basic recoding of collection sheets to yield a standardized spreadsheet format.
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 3, 2016Mar 3, 2016

    • field_data

      Public
      0•0•0•0•Updated Nov 20, 2015Nov 20, 2015

    • gus_analysis_code

      Public
      Code needed to reproduce main work done by Gus Dunn for the Caccone Lab at Yale.
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Aug 11, 2015Aug 11, 2015

    • cookiecutter-pylibrary

      Public
      Enhanced cookiecutter template for Python libraries.
      Python
      •206•0•0•0•Updated Aug 10, 2015Aug 10, 2015

    • TsetseCheckout

      Public
      A system for users to request sample tubes from the Aksoy/Caccone Labs' tsetse fly specimen database.
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 16, 2015Jan 16, 2015

    • glossina_genome_stuff

      Public
      Little things generated from necessity like chromosome name re-mappings and such that would be good to keep track of in a form that facilitates access from python etc on diff machines/hpc environments
      MIT License
      •0•0•0•0•Updated Dec 8, 2014Dec 8, 2014

    • tsetseDB

      Public
      Code associated with the creation and maintenance of the sample database for our tsetse fly population genomics project
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 21, 2014Nov 21, 2014