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    41 repositories

    • CGIBashScripts

      Public
      A repository for storing bash scripts of common use at CGI.
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • Bjorn2024

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • Primers

      Public
      Primers available at CGI
      1•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • NGSGenotype

      Public
      Erlang
      •
      GNU General Public License v3.0
      •1•0•6•0•Updated Sep 26, 2024Sep 26, 2024

    • Bjorn2022

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

    • Fjallrav_prover

      Public
      prover i MPB
      1•1•0•0•Updated Jul 31, 2024Jul 31, 2024

    • GenotypeCheck

      Public
      Tools for systematically evaluate and match genotype data
      rshinyssrgenotype
      R
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated May 21, 2024May 21, 2024

    • SSRQc

      Public
      SSR quality control
      R
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated May 17, 2024May 17, 2024

    • eDNA_reference

      Public
      Curated reference sequence data for eDNA work
      GNU General Public License v3.0
      •0•0•3•0•Updated May 13, 2024May 13, 2024

    • GenomeAnalysis

      Public
      Analysis of genome data at CGI
      Shell
      •
      GNU General Public License v3.0
      •2•2•4•0•Updated May 9, 2024May 9, 2024

    • scripts_fork

      Public
      Scripts for analysis used during the course
      R
      •62•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • esbase-new-shiny

      Public
      The shiny app of the new Esbase system
      R
      •
      GNU General Public License v3.0
      •0•0•12•0•Updated Aug 8, 2023Aug 8, 2023

    • esbaser

      Public
      Contains the functionality for the new esbase system. This is planned to be used by the esbase-new-shiny application.
      R
      •
      GNU General Public License v3.0
      •1•0•2•0•Updated Aug 3, 2023Aug 3, 2023

    • GPS-convert

      Public
      Convert GPS coordinates
      R
      •1•1•7•0•Updated Aug 25, 2022Aug 25, 2022

    • Bjorn2021

      Public
      Map showing map of progress for the scat bear monitoring at NRM
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2022Aug 22, 2022

    • BarcodeSWE

      Public
      Barcode database creation
      0•0•0•0•Updated Sep 13, 2021Sep 13, 2021

    • Bjorn2020

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 23, 2021Aug 23, 2021

    • NMO-CombineHarbourPorpoiseDataForSMHI

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 14, 2021Jul 14, 2021

    • shiny_crud

      Public
      Example Shiny apps implementing CRUD database functionality
      R
      •77•0•0•0•Updated Feb 4, 2021Feb 4, 2021

    • CGI-NRM-lista

      Public
      lista med använda CGI-NRM nummer
      0•0•0•0•Updated Nov 3, 2020Nov 3, 2020

    • cgi-nrm.github.io

      Public
      Center for genetic identification
      MIT License
      •0•0•0•0•Updated Oct 22, 2020Oct 22, 2020

    • Bjorn2019

      Public
      This repo is a map showing the analysis status for bear monitoring in Sweden 2019
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 16, 2020Jun 16, 2020

    • seqpublic

      Public
      The portal to seqdb
      HTML
      •
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated Apr 28, 2020Apr 28, 2020

    • SeqDB-documentation

      Public
      MIT License
      •1•0•36•0•Updated Apr 6, 2020Apr 6, 2020

    • Report

      Public
      Template for generating CGI reports
      TeX
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 3, 2020Jan 3, 2020

    • BearLabId

      Public
      Lab and SEP Id 2019
      0•0•0•0•Updated Sep 27, 2019Sep 27, 2019

    • Wolverine_2019

      Public
      0•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • BarcodeCGI

      Public
      Code to generate barcodes and QR codes for printing
      R
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jun 3, 2019Jun 3, 2019

    • seqdb-import

      Public
      Code to automate creation of cgi bear import file to seqdb
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 5, 2019Apr 5, 2019

    • SeqDB_Portal-Docker

      Public
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Mar 4, 2019Mar 4, 2019