Repositories list

• nexus

  Public
  Blue Brain Nexus - A knowledge graph for data-driven science

  scalanexusprovenance+ 2knowledge-graphshacl

  Scala

  •

  Apache License 2.0

  •74•280•376•1•Updated Nov 15, 2024Nov 15, 2024

• BluePyEModel

  Public
  Blue Brain Python Electrical Modeling Pipeline

  pythonworkflowbuild+ 10simulationneurosciencemodellingparameteranalyseneuronoptimisation+ 3

  Python

  •

  Other

  •5•6•0•1•Updated Nov 15, 2024Nov 15, 2024

• synthdb

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•1•Updated Nov 15, 2024Nov 15, 2024

• Brayns

  Public
  Visualizer for large-scale and interactive ray-tracing of neurons

  visualizationpythoninteractive+ 10websocketsneurosciencejson-rpcneuronsraytracingvolume-renderingpathtracing+ 3

  C++

  •

  GNU Lesser General Public License v3.0

  •47•291•0•0•Updated Nov 15, 2024Nov 15, 2024

• dir-content-diff

  Public
  Simple tool to compare directory contents and get differences using smart comparators.

  pythondiffdirectory+ 14compare-filesdirectory-comparatorfolder-comparisationfile-comparisondirectory-difffile-differencesfile-diff+ 7

  Python

  •

  Apache License 2.0

  •0•6•1•1•Updated Nov 15, 2024Nov 15, 2024

• neuroagent

  Public
  LLM agent made to communicate with different neuroscience related tools

  Python

  •

  Apache License 2.0

  •0•8•0•6•Updated Nov 15, 2024Nov 15, 2024

• spack

  Public
  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

  Python

  •

  Other

  •2.3k•9•2•44•Updated Nov 15, 2024Nov 15, 2024

• parquet-converters

  Public
  Convert neuroscientific connectome data formats

  neuroscienceconnectome-generation

  C++

  •

  Apache License 2.0

  •0•1•1•1•Updated Nov 15, 2024Nov 15, 2024

• aws-terrraform-deployment

  Public
  HCL

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• nmodl-references

  Public
  nmodl references

  C++

  •

  Apache License 2.0

  •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

• nmodl

  Public
  Code Generation Framework For NEURON MODeling Language

  hpcdslneuroscience+ 4compilerscode-generationneuron-simulatornmodl

  C++

  •

  Apache License 2.0

  •15•57•166•23•Updated Nov 15, 2024Nov 15, 2024

• aws-terrraform-deployment-common

  Public
  HCL

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• core-web-app

  Public
  Open Brain Platform

  neurosciencesimulation-neuroscience

  TypeScript

  •

  Apache License 2.0

  •0•4•0•0•Updated Nov 15, 2024Nov 15, 2024

• BioExplorer

  Public
  The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

  pythonsciencevirus+ 17neuroimagingraytracingrendering-engineneuronbrainmolecular-biologydti+ 10

  C++

  •

  Apache License 2.0

  •8•63•0•0•Updated Nov 14, 2024Nov 14, 2024

• Bluenaas

  Public
  Source code for running and retrieving neuron simulations

  Python

  •

  Apache License 2.0

  •0•0•0•5•Updated Nov 14, 2024Nov 14, 2024

• neurodamus

  Public
  A BBP Simulation Control application for NEURON

  simulationcellularneuron-simulations+ 1brain

  Python

  •

  Apache License 2.0

  •8•9•10•5•Updated Nov 14, 2024Nov 14, 2024

• aws-puppet-bolt-configuration

  Public
  Puppet

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• hpc-resource-provisioner

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• bbop-keycloak-theme

  Public
  FreeMarker

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• voxcell

  Public
  Tools to work with voxel based brain atlases.

  buildatlas

  Python

  •

  Apache License 2.0

  •3•5•3•2•Updated Nov 14, 2024Nov 14, 2024

• bbp-atlas-data-fetch

  Public
  CLI to fetch datasets from Nexus

  databaseatlas

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• bbp-atlas-web-exporter

  Public
  Export the Blue Brain Atlas Pipeline to be consumed by the Atlas web app

  databaseatlas

  C

  •

  Apache License 2.0

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• bbp-token-fetch

  Public
  Fetching and automatic refreshing of the Nexus token using Keycloak

  databaseatlas

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• morph-tool

  Public
  Python

  •

  GNU Lesser General Public License v3.0

  •7•8•1•6•Updated Nov 14, 2024Nov 14, 2024

• libsonata

  Public
  A python and C++ interface to the SONATA format

  simulationsonatamodelling+ 1circuit

  C++

  •

  GNU Lesser General Public License v3.0

  •12•12•26•2•Updated Nov 13, 2024Nov 13, 2024

• MorphIO

  Public
  A python and C++ library for reading and writing neuronal morphologies

  morphologyneuronsneuron+ 4pythongliamitochondriareticulum

  C++

  •

  Apache License 2.0

  •24•27•30•12•Updated Nov 13, 2024Nov 13, 2024

• entity-management

  Public
  Python

  •

  Apache License 2.0

  •0•2•0•2•Updated Nov 13, 2024Nov 13, 2024

• scholar2sql

  Public
  Scholar2SQL automates data extraction from papers into an SQL database.

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• citation-graph

  Public
  Blue Brain Citation & Knowledge Graph implementation in Neo4j

  neo4jknowledge-graphcitation-network

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• synthesis-workflow

  Public
  Luigi workflow for neuronal synthesis

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024