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    • cbioportal

      Public archive
      Java
      GNU Affero General Public License v3.0
      538100Updated Aug 5, 2024Aug 5, 2024
    • Seq2C

      Public
      Perl
      MIT License
      5420Updated Jan 11, 2024Jan 11, 2024
    • VarDict

      Public
      VarDict
      Perl
      MIT License
      62189381Updated Jan 5, 2024Jan 5, 2024
    • VarDict Java port
      Java
      MIT License
      55130623Updated Jan 5, 2024Jan 5, 2024
    • rnaseq-nf

      Public archive
      Nextflow
      Mozilla Public License 2.0
      104000Updated Dec 3, 2023Dec 3, 2023
    • ichorCNA

      Public archive
      Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
      R
      GNU General Public License v3.0
      89000Updated Aug 30, 2023Aug 30, 2023
    • MultiQC

      Public archive
      Aggregate results from bioinformatics analyses across many samples into a single report.
      Python
      GNU General Public License v3.0
      605300Updated Jul 6, 2023Jul 6, 2023
    • TargQC

      Public
      Alignment coverage analysis tool
      HTML
      GNU General Public License v3.0
      1000Updated Sep 11, 2019Sep 11, 2019
    • simple_sv_annotation

      Public archive
      Simplify snpEff annotations for interesting cases
      Python
      Other
      42110Updated Feb 18, 2019Feb 18, 2019
    • NGS_Utils

      Public archive
      Utility functions for bioinformatics projects
      JavaScript
      3000Updated May 21, 2018May 21, 2018
    • disambiguate

      Public archive
      Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
      C++
      MIT License
      152970Updated May 8, 2018May 8, 2018
    • MultiQC_Clarity

      Public archive
      MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
      Python
      MIT License
      5000Updated Jan 23, 2018Jan 23, 2018
    • Reference data: BED files, genes, transcripts, variations.
      Python
      298240Updated Nov 28, 2017Nov 28, 2017
    • exac_browser

      Public archive
      Browser for ExAC consortium data
      JavaScript
      MIT License
      54000Updated Jun 21, 2017Jun 21, 2017
    • sambamba

      Public archive
      Tools for working with SAM/BAM data
      D
      GNU General Public License v2.0
      106000Updated Oct 27, 2016Oct 27, 2016