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Create working components [WIP]:
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Update file test api
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KaiWaldrant committed Jul 10, 2024
1 parent 98ab68a commit f763df0
Showing 1 changed file with 26 additions and 27 deletions.
53 changes: 26 additions & 27 deletions src/api/file_test_h5ad.yaml
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
#TODO: Change to the required and/or optional fields of the anndata
type: file
example: "resources_test/denoising/pancreas/test.h5ad"
example: "resources_test/task_template/cxg_mouse_pancreas_atlas/test.h5ad"
info:
label: "Test data"
summary: The subset of molecules used for the test dataset
Expand All @@ -10,36 +10,35 @@ info:
name: counts
description: Raw counts
required: true
- type: double
name: normalized
description: Normalized counts
required: true
obs:
- type: string
name: batch
description: Batch information
required: true
var:
- type: boolean
name: hvg
description: Whether or not the feature is considered to be a 'highly variable gene'
required: true
- type: double
name: hvg_score
description: A ranking of the features by hvg.
required: true
obsm:
- type: double
name: X_pca
description: The resulting PCA embedding.
required: true
uns:
- type: string
name: dataset_id
description: "A unique identifier for the dataset"
required: true
- name: dataset_name
type: string
description: Nicely formatted name.
required: true
- type: string
name: dataset_url
description: Link to the original source of the dataset.
required: false
- name: dataset_reference
type: string
description: Bibtex reference of the paper in which the dataset was published.
required: false
- name: dataset_summary
type: string
description: Short description of the dataset.
required: true
- name: dataset_description
type: string
description: Long description of the dataset.
required: true
- name: dataset_organism
type: string
description: The organism of the sample in the dataset.
required: false
- name: train_sum
type: integer
description: The total number of counts in the training dataset.
name: normalization_id
description: "Which normalization was used"
required: true

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