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add process_datasets workflow config
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KaiWaldrant committed Jul 11, 2024
1 parent e081d17 commit ade957e
Showing 1 changed file with 34 additions and 0 deletions.
34 changes: 34 additions & 0 deletions src/workflows/process_datasets/config.vsh.yaml
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name: process_datasets
namespace: workflows
argument_groups:
- name: Inputs
arguments:
- name: "--input"
__merge__: /src/api/file_common_dataset.yaml
required: true
direction: input
- name: Outputs
arguments:
- name: "--output_train"
__merge__: /src/api/file_train_h5ad.yaml
required: true
direction: output
- name: "--output_test"
__merge__: /src/api/file_test_h5ad.yaml
required: true
direction: output
- name: "--output_solution"
__merge__: /src/api/file_solution.yaml
required: true
direction: output
resources:
- type: nextflow_script
path: main.nf
entrypoint: run_wf
- path: /common/nextflow_helpers/helper.nf
dependencies:
- name: common/check_dataset_schema
- name: common/extract_metadata
- name: predict_modality/process_dataset
runners:
- type: nextflow

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